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Pull requests: galaxyproject/tools-iuc

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367 Open 6,138 Closed
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Pull requests list

Odgi update
#7903 opened Apr 17, 2026 by mirelaminkova Contributor • Draft
17
Use @ADDMEMORY@ / @ADDTHREADS@ macros appropriately across samtools c… skip-version-check Allow IUC members to skip the version linter in PR reviews (use only for partially updated suites).
#7902 opened Apr 17, 2026 by wm75 Member Loading…
5
ncbi_datasets: Update taxonomy help text
#7901 opened Apr 17, 2026 by SaimMomin12 Contributor Loading…
3 of 5 tasks
1
2
Add Trackastra-Galaxy to perform object tracking with Trackastra
#7893 opened Apr 14, 2026 by khaled196 Contributor Loading…
2 of 5 tasks
25
Updat tools/rasusa to 4.0.0
#7886 opened Apr 13, 2026 by SaimMomin12 Contributor • Draft
3 of 5 tasks
2
Fix: kraken2 builder: update URLs
#7883 opened Apr 13, 2026 by jakobnissen Loading…
3 of 5 tasks
1
Update spade for single file processing
#7876 opened Apr 10, 2026 by SantaMcCloud Contributor Loading…
3 of 5 tasks
3
Update FastQC/Falco wrappers to generate 2 outputs in case of pair inputs
#7874 opened Apr 10, 2026 by lldelisle Contributor Loading…
Update chewbbaca with manual species ID
#7870 opened Apr 9, 2026 by nilchia Collaborator Loading…
3 of 5 tasks
1
9
Add MAGmax
#7869 opened Apr 8, 2026 by SantaMcCloud Contributor Loading…
3 of 5 tasks
5
Scanpy read anndata in backed mode to reduce memory consumption
#7852 opened Apr 1, 2026 by pavanvidem Member • Draft
3 of 5 tasks
Update FreeBayes parameters for nf-core/eager compatibility
#7850 opened Mar 30, 2026 by mertydn Contributor Loading…
36
Updating tools/mmseqs2 from version 17-b804f to 16.747c6
#7844 opened Mar 30, 2026 by gxydevbot Collaborator Loading…
Read Anndata objects in backed mode (from disk) wherever possible
#7840 opened Mar 27, 2026 by pavanvidem Member Loading…
3 of 5 tasks
2
Update FastQC/Falco wrappers to make output of pairs compatible with multiQC
#7839 opened Mar 27, 2026 by lldelisle Contributor Loading…
5 tasks
43
make it pgxRpi a suite
#7830 opened Mar 25, 2026 by bgruening Member Loading…
5 tasks
update raxml-ng to 2.0.0 + UI refactor
#7829 opened Mar 25, 2026 by amkozlov Contributor Loading…
3 of 5 tasks
20
Fix and update the omamer DM
#7828 opened Mar 24, 2026 by bernt-matthias Contributor Loading…
3 of 5 tasks
1
1
Update Liana resource tools set with access to data managers for cached data, and fix the get_metalinks API
#7827 opened Mar 24, 2026 by khaled196 Contributor Loading…
1 of 5 tasks
3
New tool: taffy
#7826 opened Mar 24, 2026 by Maed0x Contributor Loading…
3 of 5 tasks
11
Updating tools/wfmash from version 0.14.0 to 0.24.2
#7821 opened Mar 23, 2026 by gxydevbot Collaborator Loading…
Polish collection_column_join UI and help
#7811 opened Mar 22, 2026 by nekrut Contributor Loading…
2 of 3 tasks
3
Add collapse_collection tool with polished UI and help
#7810 opened Mar 22, 2026 by nekrut Contributor Loading…
2 of 3 tasks
11
map-param-value: add test cases for demo
#7804 opened Mar 19, 2026 by bernt-matthias Contributor • Draft
3 of 5 tasks
Allow single file processing spades
#7802 opened Mar 18, 2026 by paulzierep Contributor • Draft
3 of 5 tasks
7
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