Updat tools/rasusa to 4.0.0

[SaimMomin12]

FOR CONTRIBUTOR:

• I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
• License permits unrestricted use (educational + commercial)
• This PR adds a new tool or tool collection
• This PR updates an existing tool or tool collection
• This PR does something else (explain below)

There are two labels that allow to ignore specific (false positive) tool linter errors:

• skip-version-check: Use it if only a subset of the tools has been updated in a suite.
• skip-url-check: Use it if github CI sees 403 errors, but the URLs work.

[RZ9082]

It needs to be separated now, it is not common for both commands anymore. For rasusa reads: --output-type → --compress-type. For rasusa aln: --output-type → --output-format.

Also there was a new flag introduced for rasusa reads: -O, --output-format <OUTPUT_FORMAT> Explicitly set the output format [possible values: fasta, fastq, sam, bam, cram].

It is a bit confusing!

[SaimMomin12]

It needs to be separated now, it is not common for both commands anymore. For rasusa reads: --output-type → --compress-type. For rasusa aln: --output-type → --output-format.

Also there was a new flag introduced for rasusa reads: -O, --output-format <OUTPUT_FORMAT> Explicitly set the output format [possible values: fasta, fastq, sam, bam, cram].

It is a bit confusing!

@RZ9082 would you like to investigate this further?