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| </command> | ||
| <inputs> | ||
| <param name="bindir" type="data" format="fasta" multiple="true" label="Input bin file(s)"/> | ||
| <param name="readdir" type="data_collection" optional="true" collection_type="list:paired" format="fastq" multiple="true" label="Input read files" |
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| <param name="readdir" type="data_collection" optional="true" collection_type="list:paired" format="fastq" multiple="true" label="Input read files" | |
| <param name="readdir" type="data_collection" optional="true" collection_type="list:paired" format="fastqsanger" multiple="true" label="Input read files" |
Is fastqsanger.gz supported?
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I didnt found any in the readme but i will ask and upate it if this is supported!
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i did ask about it and *.gz files are not yet supported. It can be that in a month it will be supported but this depends if they release it with the next version. But it is planed to be added!
| <inputs> | ||
| <param name="bindir" type="data" format="fasta" multiple="true" label="Input bin file(s)"/> | ||
| <param name="readdir" type="data_collection" optional="true" collection_type="list:paired" format="fastq" multiple="true" label="Input read files" | ||
| help="The identifier of the pair should be name after the [sample_id] otherwise the tool can not work. For more information check the help section at the bottom of the tool! NOTE: when using the {--no-reassembly} or {--sensitive} mode this input is not needed!"/> |
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shoudn't this param only be available if --no-reassembly or --sensitive is not used?
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Yes corret this parameter and mapiddir should be available if neither one of them is used. Of one of the them or both are used then only bindir param is needed as input
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FOR CONTRIBUTOR:
There are two labels that allow to ignore specific (false positive) tool linter errors:
skip-version-check: Use it if only a subset of the tools has been updated in a suite.skip-url-check: Use it if github CI sees 403 errors, but the URLs work.