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Read Anndata objects in backed mode (from disk) wherever possible#7840

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pavanvidem wants to merge 7 commits intogalaxyproject:mainfrom
pavanvidem:anndata-backed
Open

Read Anndata objects in backed mode (from disk) wherever possible#7840
pavanvidem wants to merge 7 commits intogalaxyproject:mainfrom
pavanvidem:anndata-backed

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@pavanvidem
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FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

@pavanvidem pavanvidem closed this Apr 1, 2026
@pavanvidem pavanvidem reopened this Apr 1, 2026
@pavanvidem
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everytime a dfferent linting issue :)
Tests pass.

@bgruening
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.. ERROR: Error 'HTTPSConnectionPool(host='hastie.su.domains', port=443): Max retries exceeded with url: /ElemStatLearn/ (Caused by ConnectTimeoutError(<HTTPSConnection(host='hastie.su.domains', port=443) at 0x7fa1ba5f5e90>, 'Connection to hastie.su.domains timed out. (connect timeout=5)'))' accessing https://web.stanford.edu/~hastie/ElemStatLearn/

@bgruening bgruening closed this Apr 8, 2026
@bgruening bgruening reopened this Apr 8, 2026
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2 participants