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treangenlab / Seqwin Public

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Remove `idx` from graph construction and marker generation#32

Merged

mxwang66 merged 6 commits into

maintreangenlab/Seqwin:mainfrom

noidxtreangenlab/Seqwin:noidxCopy head branch name to clipboard

Jun 5, 2026

Conversation Commits6 (6)Checks Files changed

Merged

Remove `idx` from graph construction and marker generation#32
mxwang66 merged 6 commits into
mainfrom
noidx

Commits

Commits on Jun 4, 2026

Remove the test on private function `_create_ck()`
mxwang66
committed
Use positions to find consecutive k-mers instead of indices
mxwang66
committed

Commits on Jun 5, 2026

Remove `idx` and group thread-local `kmers` directly`
mxwang66
committed
Update raw graph pytest fixture
mxwang66
committed
Change `thread_record_offsets` to `std::uint32_t` for less conversion
mxwang66
committed
Bump version
mxwang66
committed

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