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@ACCIDDA Atlantic Coast Center for Infectious Disease Dynamics and Analytics

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    Repositories list

    43 repositories

    • imuGAP

      Public
      R
      •
      Other
      •1•2•14•2•Updated Oct 2, 2026Oct 2, 2026

    • RespiLens-staging

      Public
      A responsive web app to explore respiratory disease forecasts in the US. **Staging repository**
      JavaScript
      •5•1•0•1•Updated Oct 1, 2026Oct 1, 2026

    • flu-metrocast-nc

      Public
      Short-term forecasts for influenza at the city- and county-level -- NC DETECT Data Integration
      R
      •
      MIT License
      •17•0•0•1•Updated Oct 1, 2026Oct 1, 2026

    • imuRUN

      Public
      Beginner-friendly CLI front-end to imuGAP: hand it your data (xlsx workbook or csv/rds) and it validates and runs a fit. Sibling package to ACCIDDA/imuGAP.
      R
      •
      Other
      •0•0•4•3•Updated Oct 1, 2026Oct 1, 2026

    • insight.cast

      Public
      A complete pipeline for infectious disease forecasting
      R
      •
      Other
      •1•1•9•1•Updated Sep 30, 2026Sep 30, 2026

    • influpaint

      Public
      Influpaint : Inpainting denoising diffusion probabilistic models for infectious disease (such as influenza) forecasting
      Jupyter Notebook
      •5•21•3•2•Updated Sep 30, 2026Sep 30, 2026

    • insight.cast.odin

      Public
      odin2 module for insight.cast
      C++
      •
      Other
      •0•0•0•0•Updated Sep 30, 2026Sep 30, 2026

    • tapestry

      Public
      new influpaint, might be called Seine at some point
      Python
      •0•0•0•0•Updated Sep 30, 2026Sep 30, 2026

    • tidyschoolvax

      Public
      R
      •0•0•9•5•Updated Sep 29, 2026Sep 29, 2026

    • op_system

      Public
      Restricted model parser and typed-IR compiler for Array-API-polymorphic structured dynamical systems.
      Python
      •
      MIT License
      •1•2•32•0•Updated Sep 29, 2026Sep 29, 2026

    • op_engine

      Public
      Array-API-polymorphic operator-partitioned ODE/PDE solver with backend-native execution providers.
      Python
      •
      MIT License
      •0•4•0•0•Updated Sep 29, 2026Sep 29, 2026

    • EpiBenchmark

      Public
      Python
      •
      MIT License
      •0•4•1•2•Updated Sep 29, 2026Sep 29, 2026

    • flepimop2

      Public
      flepimop2: The FLExible Pipeline for Interchangeable MOdel Processing
      Python
      •
      GNU General Public License v3.0
      •2•5•94•15•Updated Sep 27, 2026Sep 27, 2026

    • RespiLens

      Public
      A responsive web app to explore respiratory disease forecasts in the US
      JavaScript
      •5•7•3•0•Updated Sep 25, 2026Sep 25, 2026

    • hestia

      Public
      R
      •
      Other
      •3•3•14•0•Updated Sep 25, 2026Sep 25, 2026

    • flexstanr

      Public
      Portable Stan-backend standalone script shared across ACCIDDA Stan packages (imuGAP, hestia, SeverityEstimate) via usethis::use_standalone()
      R
      •
      Other
      •0•1•4•1•Updated Sep 24, 2026Sep 24, 2026

    • .github

      Public
      0•0•0•0•Updated Sep 12, 2026Sep 12, 2026

    • vaxflux

      Public
      Python
      •
      MIT License
      •0•3•19•2•Updated Sep 10, 2026Sep 10, 2026

    • epid756

      Public
      course materials repository for Intro to ID Modeling w/ R
      R
      •
      Other
      •0•0•0•0•Updated Sep 9, 2026Sep 9, 2026

    • recurring-issues

      Public
      Create configuration defined recurring issues
      TypeScript
      •
      MIT License
      •0•0•2•7•Updated Aug 31, 2026Aug 31, 2026

    • flepimop2-extras

      Public
      Common modules for `flepimop2`
      Python
      •
      GNU General Public License v3.0
      •0•0•12•3•Updated Aug 27, 2026Aug 27, 2026

    • epid799

      Public
      course repository for EPID 799 course
      R
      •0•0•0•0•Updated Aug 17, 2026Aug 17, 2026

    • SeverityEstimate

      Public
      Estimate the severity of outbreaks using line list data with differential surveillance.
      R
      •
      Other
      •0•1•14•1•Updated Aug 12, 2026Aug 12, 2026

    • ACCIDDA-Images

      Public
      0•1•0•0•Updated Jul 8, 2026Jul 8, 2026

    • measles-dashboard

      Public
      JavaScript
      •1•0•2•0•Updated Jul 7, 2026Jul 7, 2026

    • SISMID_course

      Public
      collection of materials for SISMID course
      R
      •0•1•1•0•Updated Jun 25, 2026Jun 25, 2026

    • evd-screen-and-monitor

      Public
      Client-side JS reimplementation of the activemonitr Ebola screening-and-monitoring science (with an R correctness oracle) + an intervention-planning timeline da…
      JavaScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 17, 2026Jun 17, 2026

    • IDCUP26-screening-dashboard

      Public
      Interactive World Cup 2026 pathogen-risk screening dashboard.
      HTML
      •
      MIT License
      •0•0•1•0•Updated Jun 2, 2026Jun 2, 2026

    • wc-risk-assessment

      Public
      Code supporting analysis of pathogen risks during the 2026 FIFA World Cup
      R
      •0•0•0•0•Updated May 28, 2026May 28, 2026

    • censcast

      Public
      Forecast hopsital census from forecasting hubs
      R
      •
      Other
      •0•2•3•0•Updated May 21, 2026May 21, 2026
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