Fix broken URLs

[bernt-matthias]

Requires: #6184

TODO:

• bump tools versions

FOR CONTRIBUTOR:

• I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
• License permits unrestricted use (educational + commercial)
• This PR adds a new tool or tool collection
• This PR updates an existing tool or tool collection
• This PR does something else (explain below)

[mvdbeek]

I wouldn't bump the version or deploy the tools, I think it's fine to just do that when there is a relevant change on the next update ?

[bernt-matthias]

I wouldn't bump the version or deploy the tools, I think it's fine to just do that when there is a relevant change on the next update ?

Would be fine for me. But I have the feeling that we should document the rules when to bump / not. Sometimes people say always. Sometimes there are exceptions.

[bgruening]

I would not bump if we do not deploy. If we deploy we bump.

I would not deploy and not bump this PR. We just want to fix the linters and I think it fine to deploy with the next proper release.

[bernt-matthias]

OK. Let's merge and skip deployment.

[bernt-matthias]

We still have timeouts with archived versions of http://www.ebi.ac.uk/~zerbino/velvet/, i.e. https://web.archive.org/web/20170704005814/http://www.ebi.ac.uk/~zerbino/velvet/

Oddly not for https://web.archive.org/web/20170715194744/http://www.ebi.ac.uk/~zerbino/velvet/Manual.pdf

Anyone ideas? Would be good to have linting passing :)

[nsoranzo]

Use https://github.com/dzerbino/velvet/blob/master/Manual.pdf ?

[bgruening]

Lint is green!

[mvdbeek]

Attention: deployment cancelled!

https://github.com/galaxyproject/tools-iuc/actions/runs/10869685320