Creation of a workflow for Post-curation assembly processing

[Delphine-L]

FOR CONTRIBUTOR:

• I have read the Adding workflows guidelines
• License permits unrestricted use (educational + commercial)
• Please also take note of the reviewer guidelines below to facilitate a smooth review process.

FOR REVIEWERS:

• .dockstore.yml: file is present and aligned with creator metadata in workflow. ORCID identifiers are strongly encouraged in creator metadata. The .dockstore.yml file is required to run tests
• Workflow is sufficiently generic to be used with lab data and does not hardcode sample names, reference data and can be run without reading an accompanying tutorial.
• In workflow: annotation field contains short description of what the workflow does. Should start with This workflow does/runs/performs … xyz … to generate/analyze/etc …
• In workflow: workflow inputs and outputs have human readable names (spaces are fine, no underscore, dash only where spelling dictates it), no abbreviation unless it is generally understood. Altering input or output labels requires adjusting these labels in the the workflow-tests.yml file as well
• In workflow: name field should be human readable (spaces are fine, no underscore, dash only where spelling dictates it), no abbreviation unless generally understood
• Workflow folder: prefer dash (-) over underscore (_), prefer all lowercase. Folder becomes repository in iwc-workflows organization and is included in TRS id
• Readme explains what workflow does, what are valid inputs and what outputs users can expect. If a tutorial or other resources exist they can be linked. If a similar workflow exists in IWC readme should explain differences with existing workflow and when one might prefer one workflow over another
• Changelog contains appropriate entries
• Large files (> 100 KB) are uploaded to zenodo and location urls are used in test file

[Copilot]

Pull request overview

Adds a new Galaxy workflow package for VGP post-curation assembly processing, including documentation, Dockstore registration, and a Zenodo-backed test definition.

Changes:

• Added workflow README documenting inputs/outputs for post-curation processing and QC.
• Added Dockstore descriptor and a workflow test parameter file using Zenodo-hosted fixtures.
• Added initial changelog entry for v0.1.

Reviewed changes

Copilot reviewed 4 out of 5 changed files in this pull request and generated 11 comments.

File	Description
workflows/VGP-assembly-v2/post-curation-processing/README.md	Documents workflow purpose plus detailed input/output expectations
workflows/VGP-assembly-v2/post-curation-processing/Post_Curation-tests.yml	Defines a synthetic-data test job and output assertions
workflows/VGP-assembly-v2/post-curation-processing/CHANGELOG.md	Introduces initial versioned changelog for the workflow
workflows/VGP-assembly-v2/post-curation-processing/.dockstore.yml	Registers the workflow and points Dockstore to the test parameter file

[Delphine-L]

@github-copilot review

[Copilot]

Pull request overview

Copilot reviewed 4 out of 5 changed files in this pull request and generated 6 comments.

[mvdbeek]

Very cool!