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[26.0] Add new datatypes: .taf and .taf.gz #22242

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Merged
bernt-matthias merged 7 commits into from
Mar 31, 2026
+151 −0
Merged

[26.0] Add new datatypes: .taf and .taf.gz #22242

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2f3ed0d
Add .taf and .taf.gz
Maed0x Mar 24, 2026
e1bdbbd
Update lib/galaxy/config/sample/datatypes_conf.xml.sample
Maed0x Mar 25, 2026
8a2fa0c
Update lib/galaxy/config/sample/datatypes_conf.xml.sample
Maed0x Mar 25, 2026
f776c24
Add taf sniffer
Maed0x Mar 27, 2026
63a2100
Adjusted whitespaces
Maed0x Mar 27, 2026
2d76f38
Adjust text.py for linting
Maed0x Mar 27, 2026
d866790
Adjust text.py
Maed0x Mar 27, 2026
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1 change: 1 addition & 0 deletions lib/galaxy/config/sample/datatypes_conf.xml.sample
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Expand Up @@ -783,6 +783,7 @@
<datatype extension="strider" type="galaxy.datatypes.data:Text" subclass="true"/>
<datatype extension="supermatcher" type="galaxy.datatypes.data:Text" subclass="true"/>
<datatype extension="syco" type="galaxy.datatypes.data:Text" subclass="true"/>
<datatype extension="taf" auto_compressed_types="gz" type="galaxy.datatypes.data:Text" subclass="true" description="Transposed Alignment Format. The first line of a .taf file begins with #taf. This word is followed by white-space-separated 'variable:value' pairs. There should be no white space surrounding the ':'." display_in_upload="true" description_url="https://github.com/ComparativeGenomicsToolkit/taffy/blob/main/docs/taf_format.md"/>
<datatype extension="textsearch" type="galaxy.datatypes.data:Text" subclass="true"/>
<datatype extension="vectorstrip" type="galaxy.datatypes.data:Text" subclass="true"/>
<datatype extension="wobble" type="galaxy.datatypes.data:Text" subclass="true"/>
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