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switch to use read_azure_table_single_entity #419

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Merged
tomjemmett merged 3 commits into from
May 15, 2026
Merged

switch to use read_azure_table_single_entity #419

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6438cf7
switch to use read_azure_table_single_entity
tomjemmett May 15, 2026
a24265d
Potential fix for pull request finding
tomjemmett May 15, 2026
c8e1a2b
updates manifest
tomjemmett May 15, 2026
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ BugReports: https://github.com/The-Strategy-Unit/nhp_outputs/issues
Depends:
R (>= 4.1.0)
Imports:
azkit,
azkit (>= 0.3.0),
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AzureStor,
bs4Dash,
cachem,
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20 changes: 5 additions & 15 deletions R/fct_get_data.R
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Expand Up @@ -28,22 +28,12 @@ get_params <- function(r) {
}

get_model_run_from_ats <- function(dataset, model_run_id) {
token <- azkit::get_auth_token()

table_endpoint <- Sys.getenv("AZ_TABLE_EP")
table_name <- glue::glue(
"{Sys.getenv('AZ_TABLE_NAME')}(PartitionKey='{dataset}',RowKey='{model_run_id}')"
azkit::read_azure_table_single_entity(
Sys.getenv("AZ_TABLE_NAME"),
dataset,
model_run_id,
Sys.getenv("AZ_TABLE_EP")
)

httr2::request(table_endpoint) |>
httr2::req_url_path(table_name) |>
httr2::req_auth_bearer_token(token$credentials$access_token) |>
httr2::req_headers(
Accept = "application/json;odata=nometadata",
`x-ms-version` = "2019-02-02"
) |>
httr2::req_perform() |>
httr2::resp_body_json()
}
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get_results_from_azure <- function(filename) {
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12 changes: 6 additions & 6 deletions manifest.json
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Expand Up @@ -385,33 +385,33 @@
"description": {
"Package": "azkit",
"Title": "Azure storage authentication toolkit",
"Version": "0.2.6",
"Version": "0.3.0",
"Authors@R": "\n c(person(\n \"Fran\", \"Barton\",\n email = \"francis.barton@nhs.net\",\n role = c(\"aut\", \"cre\"),\n comment = c(ORCID = \"0000-0002-5650-1176\")\n ),\n person(\n \"Tom\", \"Jemmett\",\n email = \"thomas.jemmett@nhs.net\",\n role = \"ctb\"\n ))",
"Description": "Handles authentication and basic tasks with Azure blob storage.",
"License": "MIT + file LICENSE",
"Config/testthat/edition": "3",
"Encoding": "UTF-8",
"Roxygen": "list(markdown = TRUE)",
"RoxygenNote": "7.3.3",
"Depends": "R (>= 4.5.0)",
"Imports": "arrow, AzureAuth, AzureRMR, AzureStor, cli, dplyr, glue,\nhttr2, purrr, rlang, tibble, withr, yyjsonr",
"Suggests": "httpuv, readr, testthat (>= 3.0.0)",
"Config/roxygen2/version": "8.0.0",
"RemoteType": "github",
"RemoteHost": "api.github.com",
"RemoteRepo": "azkit",
"RemoteUsername": "the-strategy-unit",
"RemotePkgRef": "github::the-strategy-unit/azkit",
"RemoteRef": "HEAD",
"RemoteSha": "41ed4da60571cf7e3f4296613fc409857e7b060c",
"RemoteSha": "5bc96225ba3787aaf1a0e8ce21a6683fab0eb086",
"GithubRepo": "azkit",
"GithubUsername": "the-strategy-unit",
"GithubRef": "HEAD",
"GithubSHA1": "41ed4da60571cf7e3f4296613fc409857e7b060c",
"GithubSHA1": "5bc96225ba3787aaf1a0e8ce21a6683fab0eb086",
"NeedsCompilation": "no",
"Packaged": "2026-05-15 11:40:13 UTC; tom",
"Packaged": "2026-05-15 13:12:33 UTC; tom",
"Author": "Fran Barton [aut, cre] (ORCID: <https://orcid.org/0000-0002-5650-1176>),\n Tom Jemmett [ctb]",
"Maintainer": "Fran Barton <francis.barton@nhs.net>",
"Built": "R 4.6.0; ; 2026-05-15 11:40:13 UTC; unix"
"Built": "R 4.6.0; ; 2026-05-15 13:12:33 UTC; unix"
}
},
"base64enc": {
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