Move to edition 2024

Cargo.toml

@@ -14,7 +14,7 @@ keywords = ["metagenomics", "transcriptonomics", "bio", "DNA", "unipept"]
 categories = ["command-line-utilities", "science"]
 license = "MIT"
 include = ["Cargo.toml", "LICENSE", "README.md", "scripts/umgap*.sh", "src/**/*.rs"]
-edition = "2018"
+edition = "2024"
 rust-version = "1.88"
 
 [dependencies]

src/commands/snaptaxon.rs

@@ -7,8 +7,8 @@ use std::path::PathBuf;
 
 use std::str::FromStr;
 
-use clap::builder::{PossibleValuesParser, TypedValueParser};
 use clap::Args;
+use clap::builder::{PossibleValuesParser, TypedValueParser};
 
 use crate::errors;
 use crate::rank;

src/commands/taxa2agg.rs

@@ -6,8 +6,8 @@ use std::path::PathBuf;
 use std::str::FromStr;
 
 use crate::agg;
-use clap::builder::{PossibleValuesParser, TypedValueParser};
 use clap::Args;
+use clap::builder::{PossibleValuesParser, TypedValueParser};
 
 use crate::errors;
 use crate::io::fasta;

src/commands/taxa2freq.rs

@@ -10,8 +10,8 @@ use std::path::PathBuf;
 
 use std::str::FromStr;
 
-use clap::builder::{PossibleValuesParser, TypedValueParser};
 use clap::Args;
+use clap::builder::{PossibleValuesParser, TypedValueParser};
 
 use crate::errors;
 use crate::rank;

src/commands/translate.rs

@@ -4,10 +4,10 @@ use std::fmt;
 use std::io;
 use std::str::FromStr;
 
-use crate::dna::translation::TranslationTable;
 use crate::dna::Strand;
-use clap::builder::{PossibleValuesParser, TypedValueParser};
+use crate::dna::translation::TranslationTable;
 use clap::Args;
+use clap::builder::{PossibleValuesParser, TypedValueParser};
 
 use crate::errors;
 use crate::io::fasta;
@@ -128,10 +128,12 @@ pub fn translate(args: Translate) -> errors::Result<()> {
                     } else {
                         header.clone() + "|" + &name.to_string()
                     },
-                    sequence: vec![String::from_utf8(
-                        table.translate_frame(args.methionine, strand.frame(frame)),
-                    )
-                    .unwrap()],
+                    sequence: vec![
+                        String::from_utf8(
+                            table.translate_frame(args.methionine, strand.frame(frame)),
+                        )
+                        .unwrap(),
+                    ],
                 })?;
             }
         }

src/dna/translation.rs

@@ -124,11 +124,7 @@ impl TranslationTable {
     /// Translate the given codon to an AA. Translate each start codon to methionine if asked.
     pub fn translate(&self, methionine: bool, codon: &Codon) -> u8 {
         let &(start, codon) = self.table.get(codon).unwrap_or(&(false, b'-'));
-        if start && methionine {
-            b'M'
-        } else {
-            codon
-        }
+        if start && methionine { b'M' } else { codon }
     }
 
     /// Translate the given DNA frame to a peptide. Translate each start codon to methionine if