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@sys-bio

UW Sauro Lab

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  1. tellurium tellurium Public

    Python Environment for Modeling and Simulating Biological Systems

    Python 147 42

  2. roadrunner roadrunner Public

    Forked from AndySomogyi/sbmlsolver

    libRoadRunner: A high-performance SBML simulator

    C++ 64 31

Repositories

Showing 10 of 131 repositories
  • roadrunner Public Forked from AndySomogyi/sbmlsolver

    libRoadRunner: A high-performance SBML simulator

    sys-bio/roadrunner's past year of commit activity
    C++ 64 39 79 (1 issue needs help) 2 Updated Oct 24, 2026
  • PathwayDesigner-rs Public
    sys-bio/PathwayDesigner-rs's past year of commit activity
    Rust 0 MIT 0 0 0 Updated Oct 24, 2026
  • llvm-build Public

    A shell repository designed to build llvm to roadrunner's specifications, for its own builds.

    sys-bio/llvm-build's past year of commit activity
    CMake 0 MIT 0 0 0 Updated Oct 23, 2026
  • sed2-test-suite Public

    A test suite for interpreters of SED2 documents

    sys-bio/sed2-test-suite's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 21, 2026
  • pySED2Translate Public

    A translator from SED2 to a python script, using libSED2.

    sys-bio/pySED2Translate's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 21, 2026
  • SED2 Public
    sys-bio/SED2's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 21, 2026
  • WebIridium2 Public Forked from sys-bio/WebIridium

    Web-based simulation and analysis of biological models

    sys-bio/WebIridium2's past year of commit activity
    TypeScript 0 3 3 0 Updated Oct 21, 2026
  • antimony Public
    sys-bio/antimony's past year of commit activity
    C++ 23 BSD-3-Clause 4 6 0 Updated Oct 21, 2026
  • AAAIM Public

    AI-Assisted Automated Annotation of Models

    sys-bio/AAAIM's past year of commit activity
    Jupyter Notebook 4 MIT 3 0 1 Updated Oct 20, 2026
  • websim Public
    sys-bio/websim's past year of commit activity
    Rust 0 0 0 0 Updated Oct 16, 2026
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