Issues

• Database download is broken

  steineggerlab/Metabuli#195 · Filter by author cdiener opened on Jul 22, 2026
  2

• Trailing tab in unclassified classification rows breaks TSV parsing

  steineggerlab/Metabuli#194 · Filter by author SNH-star opened on Jul 22, 2026
  1

• The issue of inconsistency between species and taxid in *_report.csv

  steineggerlab/Metabuli#193 · Filter by author justqzt opened on Jul 15, 2026

• I want to put Metabuli on an online website, can you give me some suggestions?

  steineggerlab/Metabuli#192 · Filter by author zhangwenda0518 opened on Jul 6, 2026
  7

• link show err 404 - New GTDB R226 database

  steineggerlab/Metabuli#190 · Filter by author ShevchenkoAlla opened on Jun 21, 2026
  1

• [QUESTION] Extract reads that do not match a specific taxid

  steineggerlab/Metabuli#189 · Filter by author rdenise opened on Jun 11, 2026
  1

• User provided CDS info

  steineggerlab/Metabuli#186 · Filter by author MicroBTM opened on Apr 30, 2026
  2

• Resource not found while downloading

  steineggerlab/Metabuli#185 · Filter by author michoug opened on Apr 14, 2026
  4

• metabuli classifiedRefiner issues

  steineggerlab/Metabuli#177 · Filter by author MicroBTM opened on Mar 6, 2026
  12

• Linker error: undefined reference to fastq_validate_entry when building Metabuli

  steineggerlab/Metabuli#176 · Filter by author mgaurlab opened on Mar 3, 2026
  1

• Prebuilt databases do not have nodes.dmp for the use of classifiedRefiner module; segfault if using gtdb_r226 instead of gtdb_r220+virus+human database

  steineggerlab/Metabuli#175 · Filter by author TomKLHui opened on Feb 24, 2026
  4

• classifiedRefiner fails to produce krona_refined.html

  steineggerlab/Metabuli#172 · Filter by author danstrange opened on Jan 20, 2026

• Understanding Metabuli scores on real metagenomic datasets

  steineggerlab/Metabuli#171 · Filter by author taorong007 opened on Jan 19, 2026
  10

• Can Metabuli be used for the discovery of new viruses?

  steineggerlab/Metabuli#167 · Filter by author zhangwenda0518 opened on Dec 5, 2025
  1

• Integration of pyrodigal-gv for viral gene prediction in Metabuli

  steineggerlab/Metabuli#160 · Filter by author Enkabloza opened on Oct 15, 2025
  1

• How to deal with binning artifacts in the database?

  steineggerlab/Metabuli#159 · Filter by author alephreish opened on Oct 12, 2025
  3

• extract question: How to extract the unclassified reads

  steineggerlab/Metabuli#158 · Filter by author grendon opened on Oct 1, 2025
  1

• Slow building of GTDB database

  steineggerlab/Metabuli#152 · Filter by author larssnip opened on Jul 20, 2025
  8

• Segmentation fault on classify with refseq_virus, [Edit: unless --max-ram is used]

  steineggerlab/Metabuli#151 · Filter by author samuell opened on Jul 18, 2025
  3

• --seq-mode for estimating MAGs contig abundance

  steineggerlab/Metabuli#147 · Filter by author Maiya19724 opened on Jun 24, 2025
  11

• Does Metabuli classify has a resume mode ?

  steineggerlab/Metabuli#140 · Filter by author BenjaminGuinet opened on May 11, 2025
  2

• Combined database for overall classification in one run

  steineggerlab/Metabuli#131 · Filter by author gilmahu opened on May 7, 2025
  8

• From metabuli to phyloseq

  steineggerlab/Metabuli#130 · Filter by author gilmahu opened on May 7, 2025
  5

• createnewtaxalist is not completing

  steineggerlab/Metabuli#125 · Filter by author timghaly opened on Apr 16, 2025
  4

• Feature request: classify output to full taxonomy

  steineggerlab/Metabuli#123 · Filter by author shiraz-shah opened on Mar 18, 2025
  13