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Integration Testing CI Test Failure on python 3.12

Status: Open.

#689 In scverse/scirpy;

· scverse-issue-creator opened on Apr 14, 2026

distance_key is silently exchanged in define_clusters

Status: Open.

Bug

#687 In scverse/scirpy;

· dansteiert opened on Apr 13, 2026

Integration Testing CI Test Failure on python 3.13 with prerelease dependencies

Status: Open.

#686 In scverse/scirpy;

· scverse-issue-creator opened on Apr 11, 2026

New tutorial: query tetramer-staining datasets

Status: Open.

Enhancement

#677 In scverse/scirpy;

· grst opened on Feb 17, 2026

database for McPAS

Status: Open.

#653 In scverse/scirpy;

· songlyzz opened on Oct 21, 2025

Index chain error after concatenating adatas

bugSomething isn't workingSomething isn't working

Status: Open.

#648 In scverse/scirpy;

· racng opened on Oct 1, 2025

Confusing Clone Definition

bugSomething isn't workingSomething isn't working

Status: Open.

#644 In scverse/scirpy;

· yuyuleung opened on Sep 1, 2025

Title: GPL Dependencies as Hard Dependencies

Status: Open.

#603 In scverse/scirpy;

· Intron7 opened on Mar 12, 2025

Option to use TCRblosum for distance calculation

Status: Open.

#591 In scverse/scirpy;

· riederd opened on Feb 10, 2025

Add support for spot-based spatial data and bulk data

Status: Open.

#583 In scverse/scirpy;

· grst opened on Dec 16, 2024

Dealing with alleles and multiple gene calls

Status: Open.

#561 In scverse/scirpy;

· grst opened on Oct 8, 2024

Refactor distance metric histogram

breaking-change

Status: Open.

#548 In scverse/scirpy;

· grst opened on Aug 30, 2024