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e9a089f
Refactor HDF5AnnData to store file paths
lazappi Nov 25, 2025
7fd92af
Add hdf5_open_file() util function
lazappi Nov 25, 2025
c45aad5
Add HDF5File class and use in HDF5AnnData
lazappi Nov 28, 2025
e3ff523
Add close_and_defer_open() to HDF5File
lazappi Dec 1, 2025
5895fdc
Use HDF5Array in read_h5ad_dense_array()
lazappi Dec 1, 2025
f1b4db7
Add HDF5Array dependency
lazappi Dec 1, 2025
2d648f5
Use HDF5Array in read_h5ad_spase_matrix
lazappi Dec 1, 2025
6853eb5
Add backed option to HDF5AnnData
lazappi Dec 1, 2025
6a77a24
Roxygenise
lazappi Dec 1, 2025
700be2a
Style
lazappi Dec 1, 2025
26ccc1c
Add backed SingleCellExperiment conversion
lazappi Dec 2, 2025
e1c7f7d
Add backed Seurat conversion
lazappi Dec 2, 2025
52372f4
Fix lint
lazappi Dec 2, 2025
ee3f141
Add HDF5Array checks to tests
lazappi Dec 2, 2025
e96edad
Add DelayedArray as suggested dependency
lazappi Dec 2, 2025
b186df6
Roxygenize
lazappi Dec 2, 2025
3edbc53
Style code (GHA)
lazappi Dec 2, 2025
120a083
Fix namespace in tests
lazappi Dec 2, 2025
e46bbae
Expand tests for backed objects and make fixes
lazappi Dec 3, 2025
8032da2
Style code (GHA)
lazappi Dec 3, 2025
3777e25
Fix typos
lazappi Dec 3, 2025
f4d0cde
Check DelayedArray seed in to_R_matrix()
lazappi Dec 3, 2025
bb866f7
Remove unused argument in HDF5File$close()
lazappi Dec 3, 2025
86a169c
Fix return in .as_SCE_process_pairs_mapping
lazappi Dec 3, 2025
6b1657f
Merge remote-tracking branch 'origin/devel' into feature/delayed-arrray
lazappi Dec 4, 2025
d5e98fb
Merge remote-tracking branch 'origin/devel' into feature/delayed-arrray
rcannood Jan 26, 2026
3a74e82
Merge branch 'devel' into feature/delayed-arrray
lazappi Feb 11, 2026
b64c654
Merge remote-tracking branch 'origin/devel' into feature/delayed-arrray
rcannood Feb 24, 2026
ec9ddfb
style code
rcannood Feb 24, 2026
3f91dae
finish refactoring
rcannood Feb 24, 2026
e868aad
Merge remote-tracking branch 'origin/devel' into feature/delayed-arrray
rcannood Feb 25, 2026
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2 changes: 2 additions & 0 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -46,6 +46,8 @@ Imports:
Suggests:
BiocFileCache,
BiocStyle,
DelayedArray,
HDF5Array,
knitr,
processx,
rhdf5 (>= 2.52.1),
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