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@qupath

QuPath

Open source software for bioimage analysis
README.md

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  1. qupath qupath Public

    QuPath - Open-source bioimage analysis for research

    Java 1.3k 339

  2. qupath-docs qupath-docs Public

    QuPath documentation

    Python 22 25

  3. qupath-extension-stardist qupath-extension-stardist Public

    QuPath extension to run StarDist nucleus detection

    Java 48 7

  4. qupath-extension-djl qupath-extension-djl Public

    A QuPath extension for working with Deep Java Library (https://djl.ai)

    Java 10 7

  5. qupath-extension-omero-web qupath-extension-omero-web Public

    QuPath extension to work with images through OMERO's web API

    Java 10 11

  6. qupath-extension-bioimageio qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    Java 6 3

Repositories

Showing 10 of 51 repositories
  • qupath-imglib2 Public

    A Java library to link QuPath and ImgLib2

    qupath/qupath-imglib2’s past year of commit activity
    Java 1 Apache-2.0 1 1 1 Updated Apr 8, 2026
  • qupath-catalog Public

    The catalog containing QuPath extensions developed by the QuPath team

    qupath/qupath-catalog’s past year of commit activity
    1 Apache-2.0 3 2 0 Updated Apr 8, 2026
  • qupath.github.io Public

    GitHub pages site

    qupath/qupath.github.io’s past year of commit activity
    SCSS 2 MIT 5 0 3 Updated Apr 8, 2026
  • qupath Public

    QuPath - Open-source bioimage analysis for research

    qupath/qupath’s past year of commit activity
    Java 1,343 GPL-3.0 339 40 4 Updated Mar 31, 2026
  • qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    qupath/qupath-extension-bioimageio’s past year of commit activity
    Java 6 Apache-2.0 3 2 1 Updated Mar 31, 2026
  • qupath-bioimageio-spec Public

    Support for parsing the BioImage Model Zoo spec in Java

    qupath/qupath-bioimageio-spec’s past year of commit activity
    Java 0 MIT 2 2 0 Updated Mar 30, 2026
  • qupath-extension-omero Public

    QuPath extension to work with images through OMERO's APIs

    qupath/qupath-extension-omero’s past year of commit activity
    Java 9 Apache-2.0 2 3 0 Updated Mar 27, 2026
  • qupath-extension-template Public template

    Template to help create a new QuPath extension

    qupath/qupath-extension-template’s past year of commit activity
    Java 21 14 0 1 Updated Mar 19, 2026
  • qupath-extension-stitching Public

    A QuPath extension to combine TIFF images

    qupath/qupath-extension-stitching’s past year of commit activity
    Java 1 Apache-2.0 0 0 0 Updated Mar 16, 2026
  • libczi-jars Public
    qupath/libczi-jars’s past year of commit activity
    0 0 0 0 Updated Mar 16, 2026
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