Replace template with quarto

.Rbuildignore

@@ -4,16 +4,11 @@
 ^README\.Rmd$
 ^codecov\.yml$
 ^val.report\.Rproj$
-inst/source/Outputs
-inst/checks/*
-inst/source/*
-inst/source/Library
-inst/source/*Rcheck
-inst/source/*tar.gz
-inst/*.rds
-validation_report_*
-_pkgdown.yaml
-pkgdown
-.github
-docs
+^inst/report/\.git
+^inst/report/\.quarto
+^_pkgdown.yml$
+^_pkgdown.yaml$
+^pkgdown
+^.github
 ^\.github$
+^docs

.github/workflows/R-CMD-check.yaml

@@ -40,6 +40,8 @@ jobs:
 
     steps:
       - uses: actions/checkout@v4
+        with:
+          submodules: 'true'
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.github/workflows/pkgdown.yaml

@@ -24,6 +24,8 @@ jobs:
       contents: write
     steps:
       - uses: actions/checkout@v4
+        with:
+          submodules: 'true'
 
       - uses: r-lib/actions/setup-pandoc@v2
 

.gitignore

@@ -1,14 +1,6 @@
-.Rproj.user
+*.Rproj
+*.Rproj.user
 .Rhistory
 .RData
 .Ruserdata
-val.report.Rproj
-inst/doc
-inst/assessments
-inst/source/Outputs/
-inst/source/Library
-inst/source/*Rcheck
-inst/source/*tar.gz
-inst/source/
-inst/checks/
 docs

.gitmodules

@@ -0,0 +1,6 @@
+# to use ssh credentials, run:
+# git config url."ssh://git@".insteadOf https://
+
+[submodule "inst/report"]
+	path = inst/report
+	url = https://github.com/pharmaR/rvalhub-report-quarto.git

DESCRIPTION

@@ -14,25 +14,27 @@ BugReports: https://github.com/pharmaR/val.report/issues
 Depends:
     R (>= 4.3.0)
 Imports:
-    grDevices,
+    callr,
+    knitr,
     methods,
-    htmltools,
     quarto (>= 1.4.4),
-    reactable,
+    S7,
+    tools,
     utils,
+    val.meter,
     yaml
 Suggests: 
-    knitr,
-    riskmetric (>= 0.2.4),
     rmarkdown,
-    S7,
     spelling,
     testthat (>= 3.0.0),
     withr (>= 3.0.2)
+Remotes:
+    val.meter=github::pharmaR/val.meter
 VignetteBuilder: 
     knitr
 Config/testthat/edition: 3
 Encoding: UTF-8
 Language: en-US
 Roxygen: list(markdown = TRUE)
+Config/roxygen2/version: 8.0.0
 RoxygenNote: 7.3.3

NAMESPACE

@@ -1,25 +1,24 @@
 # Generated by roxygen2: do not edit by hand
 
-export(assessment)
-export(check_reporter)
-export(environ_report)
-export(is_risk_error)
 export(knit_print.knitr_log)
 export(knitr_logger)
 export(knitr_mutable_header)
 export(knitr_update_options)
-export(options_report)
 export(package_report)
 export(session)
-export(summary_table)
+importFrom(S7,convert)
+importFrom(callr,r)
 importFrom(grDevices,grSoftVersion)
-importFrom(htmltools,div)
 importFrom(methods,is)
+importFrom(quarto,quarto_render)
+importFrom(quarto,quarto_version)
 importFrom(tools,check_packages_in_dir_details)
+importFrom(tools,file_ext)
 importFrom(utils,capture.output)
-importFrom(utils,getFromNamespace)
 importFrom(utils,head)
 importFrom(utils,packageName)
 importFrom(utils,sessionInfo)
 importFrom(utils,tail)
+importFrom(val.meter,metrics)
+importFrom(val.meter,pkg)
 importFrom(yaml,yaml.load)