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@BrainlifeMEEG BrainlifeMEEG

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    73 repositories

    • coreg

      Public
      Coregistration aligns the digitized head shape and fiducials (nasion, LPA, RPA) to the FreeSurfer MRI surface. The output transform (trans.fif) is required to c…
      Python
      •1•0•0•0•Updated Oct 15, 2026Oct 15, 2026

    • noise-covariance

      Public
      This Brainlife.io app computes the noise covariance matrix for MEG/EEG data from baseline or empty-room recordings. If no options are provided or an error occur…
      Python
      •1•0•0•0•Updated Oct 15, 2026Oct 15, 2026

    • label-timecourse

      Public
      Brainlife.io app to extract label time courses from a MEG/EEG source estimate (STC). Given a source estimate and a FreeSurfer parcellation atlas, this app extr…
      Python
      •1•0•0•0•Updated Oct 15, 2026Oct 15, 2026

    • source-estimate

      Public
      Apply a pre-computed inverse operator to evoked MEG/EEG data and produce source estimates (STCs).
      Python
      •1•0•0•0•Updated Oct 15, 2026Oct 15, 2026

    • inverse-operator

      Public
      Brainlife.io app to compute the MNE inverse operator for MEG/EEG surface source reconstruction.
      Python
      •1•0•0•0•Updated Oct 15, 2026Oct 15, 2026

    • source-space

      Public
      Compute a surface-based source space from a FreeSurfer reconstruction.
      Python
      •1•0•0•0•Updated Oct 15, 2026Oct 15, 2026

    • make-bem

      Public
      Brainlife app to compute a BEM (Boundary Element Model) from a FreeSurfer recon-all output.
      Python
      •1•0•0•0•Updated Oct 15, 2026Oct 15, 2026

    • forward

      Public
      Computes an MEG/EEG forward solution
      Python
      •1•0•0•0•Updated Oct 13, 2026Oct 13, 2026

    • BrainlifePipelineCLI

      Public
      Project-agnostic toolkit for scripting brainlife.io pipelines (app-run chaining with retry/checkpointing, Pipeline-tab rule management via the Warehouse API)
      Python
      •
      Other
      •0•0•0•0•Updated Oct 11, 2026Oct 11, 2026

    • MEEG-apps-suite

      Public
      Brainlife.io MNE Apps Suite
      HTML
      •
      Other
      •1•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • evoked-averaged

      Public
      Python
      •
      Other
      •3•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • average-erp

      Public
      Brainlife.io app: average MEG/EEG epochs into one or more condition ERPs (Evoked)
      eeg
      eeg
      Python
      •
      Other
      •2•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • plot-epochs

      Public
      Brainlife app to plot averages of epochs
      Python
      •
      Other
      •0•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • info-evoked

      Public
      Python
      •
      Other
      •2•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • make-watershed-bem

      Public
      Makes watershed BEM from given Freesurfer output
      megeeg
      megeeg
      Python
      •
      Other
      •3•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • info-epo

      Public
      Python
      •
      Other
      •2•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • info-raw

      Public
      Python
      •
      Other
      •2•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • head-pos

      Public
      Compute time varying head positions from MEG signals when cHPI were recorded.
      Python
      •
      Other
      •1•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • eventslog

      Public
      Show events in file. (plot events log)
      Python
      •
      Other
      •2•0•0•1•Updated Oct 9, 2026Oct 9, 2026

    • plot-proj-topomaps-raw

      Public
      Brainlife App to plot SSP projectors
      Python
      •
      Other
      •1•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • meegflow-app

      Public
      Interface to the MEEGflow Preprocessing Pipeline
      Python
      •
      Other
      •0•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • autoreject

      Public
      Brainlife App to automatically detect and repair bad epochs/channels in MEG/EEG epoched data using autoreject
      Python
      •0•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • crop-raw

      Public
      Crop raw data between two time points.
      Python
      •
      Other
      •0•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • events

      Public
      meeg
      meeg
      Python
      •
      Other
      •3•0•0•1•Updated Oct 9, 2026Oct 9, 2026

    • filter-epo

      Public
      Brainlife app for temporal filtering of MEG/EEG signals using MNE python
      meeg
      meeg
      Python
      •
      Other
      •2•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • ica-fit-epo

      Public
      Set up and fit ICA on epoched MEG/EEG data using MNE-python
      meeg
      meeg
      Python
      •
      Other
      •2•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • ICA-apply-epo

      Public
      meeg
      meeg
      Python
      •
      Other
      •1•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • apply-baseline

      Public
      Apply baseline correction to MNE Epochs instance
      meeg
      meeg
      Python
      •
      Other
      •2•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • rereference

      Public
      App for rereferencing EEG recordings
      eeg
      eeg
      Python
      •
      Other
      •1•0•0•0•Updated Oct 9, 2026Oct 9, 2026

    • interpolate

      Public
      meeg
      meeg
      Python
      •
      Other
      •4•0•0•0•Updated Oct 9, 2026Oct 9, 2026
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