d-flex flex-column width-full">

fix: use Path.cwd() instead of os.getcwd() for lint compliance

2eebf84

Select commit

Loading

Failed to load commit list.

Uh oh!

There was an error while loading. Please reload this page.

Codecov

codecov/project

Graphite App

Graphite / mergeability_check

Lint tools code formatting on: pull_request

pre-commit

Python tests on: pull_request 5

Get test file matrix

Run test_cli.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/test_info.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/test_install.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/lint/test_integration.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/lint/test_main_nf.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/lint/test_nf_test.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/lint/test_patch.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/lint/test_local.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/test_update.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/test_create.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/test_remove.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/test_patch.py with Python 3.10 and Nextflow 25.10.4

Run subworkflows/test_list.py with Python 3.10 and Nextflow 25.10.4

Run test_subworkflows.py with Python 3.10 and Nextflow 25.10.4

Run test_lint_utils.py with Python 3.10 and Nextflow 25.10.4

Run test_modules.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_create_logo.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_refgenie.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_completion.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/download/test_container.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/download/test_download.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/download/test_utils.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/download/test_docker.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/download/test_singularity.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_params_file.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_lint.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_files_exist.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_version_consistency.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_modules_json.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_files_unchanged.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_merge_markers.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_plugin_includes.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_nf_test_content.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_actions_awstest.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_container_configs.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_actions_nf_test.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_actions_schema_validation.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_rocrate_readme_sync.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_local_component_structure.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_template_strings.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_nextflow_config.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_multiqc_config.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_if_empty_null.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_configs.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_actions_awsfulltest.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/lint/test_nfcore_yml.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_container_configs.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_create_app.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_create.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_rocrate.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_bump_version.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_launch.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_schema.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_sync.py with Python 3.10 and Nextflow 25.10.4

Run pipelines/test_list.py with Python 3.10 and Nextflow 25.10.4

Run test_components.py with Python 3.10 and Nextflow 25.10.4

Run modules/test_info.py with Python 3.10 and Nextflow 25.10.4

Run modules/test_modules_json.py with Python 3.10 and Nextflow 25.10.4

Run modules/test_modules_utils.py with Python 3.10 and Nextflow 25.10.4

Run modules/test_install.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_environment_yml.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_module_lint_local.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_main_nf.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_lint_utils.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_module_version.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_module_lint_remotes.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_module_todos.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_module_tests.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_patch.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_meta_yml.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_module_changes.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_module_lint_integration.py with Python 3.10 and Nextflow 25.10.4

Run modules/lint/test_module_deprecations.py with Python 3.10 and Nextflow 25.10.4

Run modules/test_update.py with Python 3.10 and Nextflow 25.10.4

Run modules/test_create.py with Python 3.10 and Nextflow 25.10.4

Run modules/test_bump_versions.py with Python 3.10 and Nextflow 25.10.4

Run modules/test_remove.py with Python 3.10 and Nextflow 25.10.4

Run modules/test_patch.py with Python 3.10 and Nextflow 25.10.4

Run modules/test_list.py with Python 3.10 and Nextflow 25.10.4

Run test_utils.py with Python 3.10 and Nextflow 25.10.4

Run components/test_components_utils.py with Python 3.10 and Nextflow 25.10.4

Run components/test_completion.py with Python 3.10 and Nextflow 25.10.4

Run components/test_components_snapshot_test.py with Python 3.10 and Nextflow 25.10.4

Run components/test_components_generate_snapshot.py with Python 3.10 and Nextflow 25.10.4

Run test_test_utils.py with Python 3.10 and Nextflow 25.10.4

Run test_pipelines.py with Python 3.10 and Nextflow 25.10.4

Run test_datasets/test_test_datasets_utils.py with Python 3.10 and Nextflow 25.10.4

Run test_datasets/test_test_datasets_search.py with Python 3.10 and Nextflow 25.10.4

Create a pipeline and test it on: pull_request

RunTestWorkflow (25.10.4)

RunTestWorkflow (latest-everything)

Create a pipeline and run nf-core linting on: pull_request

MakeTestWorkflow (25.10.4)

MakeTestWorkflow (latest-everything)

Create a pipeline from a template and test it on: pull_request

Retrieve all template features

RunTestWorkflow (github_badges)

RunTestWorkflow (changelog)

RunTestWorkflow (license)

RunTestWorkflow (ci)

RunTestWorkflow (nf-test)

RunTestWorkflow (igenomes)

RunTestWorkflow (modules)

RunTestWorkflow (multiqc)

RunTestWorkflow (fastqc)

RunTestWorkflow (nf_schema)

RunTestWorkflow (nf_core_configs)

RunTestWorkflow (seqera_platform)

RunTestWorkflow (gpu)

RunTestWorkflow (codespaces)

RunTestWorkflow (vscode)

RunTestWorkflow (code_linters)

RunTestWorkflow (citations)

RunTestWorkflow (documentation)

RunTestWorkflow (rocrate)

RunTestWorkflow (email)

RunTestWorkflow (all)

Select a check to view from the sidebar