[KarinSchork]

No description provided.

[Copilot]

Pull request overview

This PR increases package test coverage by adding a new testthat case for exporting aggregated results, and includes a few roxygen/documentation formatting cleanups to keep generated docs/imports consistent.

Changes:

• Add a new testthat test that exercises exportSE() end-to-end by writing an .xlsx file and asserting it is created.
• Normalize several @importFrom roxygen tags to single-line entries.
• Minor documentation/whitespace cleanup in aggregateReplicates documentation (roxygen + generated .Rd).

Reviewed changes

Copilot reviewed 5 out of 6 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
tests/testthat/test_07_resultAggregation_and_Export.R	Adds an export-focused test to improve coverage of exportSE() file output behavior.
R/plotting.R	Roxygen import formatting cleanup for igraph imports.
R/06_optimization.R	Roxygen import formatting cleanup for checkmate imports.
R/05_proteinElimination.R	Roxygen import formatting cleanup for checkmate imports.
R/02_peptidePreprocessing.R	Minor roxygen whitespace + import formatting cleanup in aggregateReplicates docs.
man/aggregateReplicates.Rd	Regenerated/updated .Rd reflecting the roxygen documentation tweak.

Files not reviewed (1)

• man/aggregateReplicates.Rd: Generated file

---

💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.