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Fixed ncbi timeout - #149

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mmzdouc merged 1 commit into
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dev_patch
Dec 7, 2025
Merged

mmzdouc merged 1 commit into
mainfrom
dev_patch

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@mmzdouc mmzdouc commented Dec 7, 2025

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Fixed NCBI timeout functionality by using concurrent.futures.
Previous requests-based implementation was blocked by the NCBI servers.
For future reference, here the error message:

urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='eutils.ncbi.nlm.nih.gov', port=443): Max retries exceeded with url: /entrez/eutils/efetch.fcgi?db=protein&id=BED42923.1&rettype=fasta&retmode=text (Caused by NewConnectionError("HTTPSConnection(host='eutils.ncbi.nlm.nih.gov', port=443): Failed to establish a new connection: [Errno 101] Network is unreachable"))

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mmzdouc merged commit 6d1e0db into main Dec 7, 2025
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mmzdouc deleted the dev_patch branch December 7, 2025 10:05
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