Name		Name	Last commit message	Last commit date
chromR_object_files/figure-html		chromR_object_files/figure-html
depth_plot_files/figure-html		depth_plot_files/figure-html
determining_ploidy_1_files/figure-html		determining_ploidy_1_files/figure-html
determining_ploidy_2_files/figure-html		determining_ploidy_2_files/figure-html
dnabin_files/figure-html		dnabin_files/figure-html
filtering_data_files/figure-html		filtering_data_files/figure-html
genetic_differentiation_files/figure-html		genetic_differentiation_files/figure-html
how_much_memory_files/figure-html		how_much_memory_files/figure-html
missing_data_files/figure-html		missing_data_files/figure-html
omitting_data_files/figure-html		omitting_data_files/figure-html
quality_filtering_files/figure-html		quality_filtering_files/figure-html
quick_intro_files/figure-html		quick_intro_files/figure-html
ranking_data_files/figure-html		ranking_data_files/figure-html
sequence_coverage_files/figure-html		sequence_coverage_files/figure-html
site_libs		site_libs
vcf_data_files/figure-html		vcf_data_files/figure-html
visualization_1_files/figure-html		visualization_1_files/figure-html
visualization_2_files/figure-html		visualization_2_files/figure-html
.gitignore		.gitignore
Makefile		Makefile
README.html		README.html
README.md		README.md
Supercontig_1.10.vcf.gz		Supercontig_1.10.vcf.gz
Supercontig_1.5.vcf.gz		Supercontig_1.5.vcf.gz
Supercontig_1.50.vcf.gz		Supercontig_1.50.vcf.gz
TASSEL_GBS0077.vcf.gz		TASSEL_GBS0077.vcf.gz
_site.yml		_site.yml
apply.Rmd		apply.Rmd
apply.html		apply.html
censoring_data.Rmd		censoring_data.Rmd
censoring_data.html		censoring_data.html
chromR_object.Rmd		chromR_object.Rmd
chromR_object.html		chromR_object.html
compiling_vcfR.Rmd		compiling_vcfR.Rmd
compiling_vcfR.html		compiling_vcfR.html
depth_plot.Rmd		depth_plot.Rmd
depth_plot.html		depth_plot.html
determining_ploidy_1.Rmd		determining_ploidy_1.Rmd
determining_ploidy_1.html		determining_ploidy_1.html
determining_ploidy_2.Rmd		determining_ploidy_2.Rmd
determining_ploidy_2.html		determining_ploidy_2.html
dip_to_hap.Rmd		dip_to_hap.Rmd
dip_to_hap.html		dip_to_hap.html
dnabin.Rmd		dnabin.Rmd
dnabin.html		dnabin.html
export.Rmd		export.Rmd
export.html		export.html
export_genind_genclone.Rmd		export_genind_genclone.Rmd
export_genind_genclone.html		export_genind_genclone.html
export_genlight_snpclone.Rmd		export_genlight_snpclone.Rmd
export_genlight_snpclone.html		export_genlight_snpclone.html
export_vcfgz.Rmd		export_vcfgz.Rmd
export_vcfgz.html		export_vcfgz.html
extract_data.Rmd		extract_data.Rmd
extract_data.html		extract_data.html
filtering_data.Rmd		filtering_data.Rmd
filtering_data.html		filtering_data.html
footer.html		footer.html
gbs_class.Rmd		gbs_class.Rmd
gbs_class.html		gbs_class.html
genetic_differentiation.Rmd		genetic_differentiation.Rmd
genetic_differentiation.html		genetic_differentiation.html
googlecode.html		googlecode.html
header.html		header.html
how_much_memory.Rmd		how_much_memory.Rmd
how_much_memory.html		how_much_memory.html
index.Rmd		index.Rmd
index.html		index.html
matrices.Rmd		matrices.Rmd
matrices.html		matrices.html
missing_data.Rmd		missing_data.Rmd
missing_data.html		missing_data.html
omitting_data.Rmd		omitting_data.Rmd
omitting_data.html		omitting_data.html
pinf_ref_vars.csv		pinf_ref_vars.csv
pinf_ref_wins.csv		pinf_ref_wins.csv
ploidy.Rmd		ploidy.Rmd
ploidy.html		ploidy.html
quality_filtering.Rmd		quality_filtering.Rmd
quality_filtering.html		quality_filtering.html
quick_intro.Rmd		quick_intro.Rmd
quick_intro.html		quick_intro.html
ranking_data.Rmd		ranking_data.Rmd
ranking_data.html		ranking_data.html
reporting_issue.Rmd		reporting_issue.Rmd
reporting_issue.html		reporting_issue.html
rlanguage.Rmd		rlanguage.Rmd
rlanguage.html		rlanguage.html
sequence_coverage.Rmd		sequence_coverage.Rmd
sequence_coverage.html		sequence_coverage.html
styles.css		styles.css
subset_data_to_1chrom.Rmd		subset_data_to_1chrom.Rmd
subset_data_to_1chrom.html		subset_data_to_1chrom.html
tidy_vcfR.Rmd		tidy_vcfR.Rmd
tidy_vcfR.html		tidy_vcfR.html
vcfR_documentation.Rproj		vcfR_documentation.Rproj
vcfR_documentation.bib		vcfR_documentation.bib
vcfR_object.Rmd		vcfR_object.Rmd
vcfR_object.html		vcfR_object.html
vcf_data.Rmd		vcf_data.Rmd

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