GitHub - jefferislab/ImageJMacros: General Jefferis Lab ImageJ macros

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Name		Name	Last commit message	Last commit date
Latest commit History 148 Commits
3DStitch.txt		3DStitch.txt
BatchConvert8bitNrrdTo16bitNrrd.txt		BatchConvert8bitNrrdTo16bitNrrd.txt
BatchConvertAnyToNrrd.txt		BatchConvertAnyToNrrd.txt
BatchConvertAnyToNrrdAddingJaneliaCalibration.ijm		BatchConvertAnyToNrrdAddingJaneliaCalibration.ijm
BatchConvertFlycircuitLSMsToNrrds.txt		BatchConvertFlycircuitLSMsToNrrds.txt
BatchConvertLSMsToNrrds_Jonny.txt		BatchConvertLSMsToNrrds_Jonny.txt
BatchConvertLSMsToPICs.txt		BatchConvertLSMsToPICs.txt
BatchConvertLSMsToPICsRespectingChannels.txt		BatchConvertLSMsToPICsRespectingChannels.txt
BatchConvertLSMsToPICsRespectingChannelsLeft.txt		BatchConvertLSMsToPICsRespectingChannelsLeft.txt
BatchConvertLSMsToPICsRespectingChannelsOld.txt		BatchConvertLSMsToPICsRespectingChannelsOld.txt
BatchConvertLSMsToPICsRespectingChannelsRotate180.txt		BatchConvertLSMsToPICsRespectingChannelsRotate180.txt
BatchConvertNRRDToZProjJPGS.txt		BatchConvertNRRDToZProjJPGS.txt
BatchConvertNrrdToAmira.txt		BatchConvertNrrdToAmira.txt
BatchConvertNrrdToPIC.txt		BatchConvertNrrdToPIC.txt
BatchConvertNrrdsToJpgsRespectingFolders.txt		BatchConvertNrrdsToJpgsRespectingFolders.txt
BatchConvertNrrdsToJpgsRespectingFoldersCommandline.txt		BatchConvertNrrdsToJpgsRespectingFoldersCommandline.txt
BatchConvertNrrdsToJpgsRespectingFoldersResliceZ.txt		BatchConvertNrrdsToJpgsRespectingFoldersResliceZ.txt
BatchConvertStacksToZProjJPGS.txt		BatchConvertStacksToZProjJPGS.txt
BatchConvertStacksToZProjJPGS.txt.ijm		BatchConvertStacksToZProjJPGS.txt.ijm
BatchConvertStacksToZProjJPGSRespectingChannels.txt		BatchConvertStacksToZProjJPGSRespectingChannels.txt
BatchConvertSytBrainLSMsToPICs090617.txt		BatchConvertSytBrainLSMsToPICs090617.txt
BatchConvertSytBrainLSMsToPICsGJAC.txt		BatchConvertSytBrainLSMsToPICsGJAC.txt
BatchConvertTifToPIC.txt		BatchConvertTifToPIC.txt
BatchConvertVNCsLSMsToPICs.txt		BatchConvertVNCsLSMsToPICs.txt
BatchDownsampleAmiraRespectingFolders.txt		BatchDownsampleAmiraRespectingFolders.txt
BatchFlipPICsHorizontally.txt		BatchFlipPICsHorizontally.txt
BatchGetLHSections.txt		BatchGetLHSections.txt
BatchKalmanFilter.txt		BatchKalmanFilter.txt
BatchParseLSMMetadata.txt		BatchParseLSMMetadata.txt
BatchProjectTif.txt		BatchProjectTif.txt
BatchRotatePics180.txt		BatchRotatePics180.txt
BatchSimpleCaTrace.txt		BatchSimpleCaTrace.txt
BatchStackregTiffs.ijm		BatchStackregTiffs.ijm
BlendTwoGreenChannels.ijm		BlendTwoGreenChannels.ijm
GMR-LexA_easyopen.ijm		GMR-LexA_easyopen.ijm
MakeMontageDimorphicConnections.txt		MakeMontageDimorphicConnections.txt
OpenImagesInImage5D.txt		OpenImagesInImage5D.txt
ReverseAndFlipNrrds.txt		ReverseAndFlipNrrds.txt
flylight_easyopen.ijm		flylight_easyopen.ijm
openForJonnyTracing.txt		openForJonnyTracing.txt
openImage-setMinMax.txt		openImage-setMinMax.txt
openItoBrainMap.txt		openItoBrainMap.txt
openLSMInImage5D.txt		openLSMInImage5D.txt
openStackorRGBinImage5d.txt		openStackorRGBinImage5d.txt
transformImage.txt		transformImage.txt

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General Jefferis Lab ImageJ macros – e.g. split lsms

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