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docs: Add PAASTA Bioinformatics Summer School 2026 notebook

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#216 In instadeepai/winnow;

· BioGeek opened on Jun 19, 2026

Update the getting_started_with_winnow notebook

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#215 In instadeepai/winnow;

· BioGeek opened on Jun 19, 2026

docs: add Winnow logo to README

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#209 In instadeepai/winnow;

· BioGeek opened on Jun 11, 2026

docs: Add license for pretrained model

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#208 In instadeepai/winnow;

· BioGeek opened on Jun 11, 2026

fix: Update calibrator.pkl

bugSomething isn't workingSomething isn't working

Status: Open.

#198 In instadeepai/winnow;

· aretaon opened on Apr 23, 2026

feat: add CLI command for PSM table assembly from Winnow output

Status: Open.

#197 In instadeepai/winnow;

· BioGeek opened on Apr 21, 2026

build: Create a bioconda package for winnow-fdr

Status: Open.

#193 In instadeepai/winnow;

· BioGeek opened on Apr 15, 2026

feat: Add mgf file support for MZTab data loader

enhancementNew feature or requestNew feature or request

Status: Open.

#174 In instadeepai/winnow;

· JemmaLDaniel opened on Apr 2, 2026

Feat: Add precursor ion signal percentage feature

enhancementNew feature or requestNew feature or request

Status: Open.

#145 In instadeepai/winnow;

· JemmaLDaniel opened on Nov 17, 2025

Feature: Allow processing of a folder of files at a time

enhancementNew feature or requestNew feature or request

Status: Open.

#139 In instadeepai/winnow;

· JemmaLDaniel opened on Nov 14, 2025

Refactor: Simplify storage format for predictions and target sequences

refactorCode cleanup and architectural improvementsCode cleanup and architectural improvements

Status: Open.

#138 In instadeepai/winnow;

· JemmaLDaniel opened on Nov 14, 2025

Feature: Give more results file export options

enhancementNew feature or requestNew feature or request

Status: Open.

#137 In instadeepai/winnow;

· JemmaLDaniel opened on Nov 14, 2025