WIP: json-ld context for BIDS document & Jupyter Notebook#1
Open
natachaperez wants to merge 9 commits intoincf-nidash:masterfrom
Open
WIP: json-ld context for BIDS document & Jupyter Notebook#1natachaperez wants to merge 9 commits intoincf-nidash:masterfrom
natachaperez wants to merge 9 commits intoincf-nidash:masterfrom
Conversation
In this jupyter notebook, you will find documents illustrating: - How to go from a BIDS dataset to a JSON-LD BIDS dataset - How to go from a BIDS dataset to a JSON-LD NIDM-experiment dataset Moreover, you will find a report on how close/different those representations are, what could be done in future work to make them closer and what are the issues (if any) that seem much harder to solve.
These documents illustrate an example showing: - How to go from a BIDS dataset to a JSON-LD BIDS dataset - How to go from a BIDS dataset to a JSON-LD NIDM-experiment dataset We will further discuss how close/different those representations are, what could be done in future work to make them closer and what are the issues (if any) that seem much harder to solve.
Wrap up BIDS NIDM-Experiment
Jupyter Notebook: Wrap up BIDS NIDM-E
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
The idea is to create a json document to store all the bids attributes defined in the bids specification : https://bids-specification.readthedocs.io/en/stable/.
Some of the bids attributes are also described in NIDM-Experiment. For that ones, we use the existing prefix and URIs.
For the attributes which only exist in BIDS, we define a prefix with a corresponding new URI:
"bids" : "https://bids.neuroimaging.io#"
Then, the linked attributes will be defined as follows:
"Name" : " https://bids.neuroimaging.io#Name",