Skip to content
BranchesTags

Latest commit

 

History

13 Commits

Folders and files

NameName
Last commit message
Last commit date
docs
docs
 
 
publication
publication
 
 
publication_figures_and_tables
publication_figures_and_tables
 
 
raw_data
raw_data
 
 
.gitignore
.gitignore
 
 
01--prepare_reference_database.Rmd
01--prepare_reference_database.Rmd
 
 
02--preparation_and_quality_filtering.Rmd
02--preparation_and_quality_filtering.Rmd
 
 
03--abundance_matrix_preparation.Rmd
03--abundance_matrix_preparation.Rmd
 
 
04--blast_classification.Rmd
04--blast_classification.Rmd
 
 
05--otu_clustering_threshold.Rmd
05--otu_clustering_threshold.Rmd
 
 
06--mock_community.Rmd
06--mock_community.Rmd
 
 
07--nontarget_amplification.Rmd
07--nontarget_amplification.Rmd
 
 
08--amplicon_taxonomic_resolution.Rmd
08--amplicon_taxonomic_resolution.Rmd
 
 
09--simulated_pcr_results.Rmd
09--simulated_pcr_results.Rmd
 
 
README.Rmd
README.Rmd
 
 
README.md
README.md
 
 
_site.yml
_site.yml
 
 
index.Rmd
index.Rmd
 
 
rps10_barcode.Rproj
rps10_barcode.Rproj
 
 
style.R
style.R
 
 
style.css
style.css
 
 
tools.R
tools.R
 
 

Repository files navigation

Analysis code for “A new oomycete metabarcoding method using the rps10 gene”

Authors: Zachary S. L. Foster, Felipe E Albornoz, Valerie J Fieland, Meredith M Larsen, Frank Andrew Jones, Brett M Tyler, Hai D. T. Nguyen, Treena I Burgess, Carolyn Riddell, Hermann Voglmayr, Frank N Martin, Niklaus J Grunwald

bioRxiv 2021.09.22.460084; doi: https://doi.org/10.1101/2021.09.22.460084

About

Analysis code for "A new oomycete metabarcoding method using the rps10 gene"

grunwaldlab.github.io/rps10_barcode/

Resources

Readme
Activity
Custom properties

Stars

0 stars

Watchers

3 watching

Forks

1 fork
Report repository

Releases

Packages

Contributors

Languages