Issues

• i ran report with one drug, no interaction summary in pdf report. i want to confirm reaction data sections show up on multi drug treatment. should the empty sections for drug interaction/normalization show even with just 1 drug that doesnt need normalization

  greenrobotllc/bio-neighbor#107 · Filter by author andytriboletti opened on May 13, 2026
  

• document methodology after trying test of a different way of doing it. 1 summary from data instead of generating mini summaties and summarizing summaries

  greenrobotllc/bio-neighbor#106 · Filter by author andytriboletti opened on May 12, 2026

• Is the report determistic?

  greenrobotllc/bio-neighbor#105 · Filter by author andytriboletti opened on May 12, 2026
  

• Setup GitHub Actions CI tests

  greenrobotllc/bio-neighbor#104 · Filter by author andytriboletti opened on May 12, 2026
  

• Testing: Have AI generate example treatments for the different types of breast cancers. Read results, have ai read the result pdf, see if theres any omissions or errors, then expand to the other types

  greenrobotllc/bio-neighbor#102 · Filter by author andytriboletti opened on May 12, 2026
  

• Create Rubric for scoring treatment plans, then evaluate 10, 100, etc cancer treatment plans from National Cancer Database (NCDB), process results

  greenrobotllc/bio-neighbor#100 · Filter by author andytriboletti opened on May 12, 2026
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• Tracking: positioning, safety, evidence-grading, and benchmarking follow-ups (from positioning review)

  greenrobotllc/bio-neighbor#98 · Filter by author andytriboletti opened on May 11, 2026

• Partnership target tracker in docs/PARTNERSHIPS.md

  greenrobotllc/bio-neighbor#97 · Filter by author andytriboletti opened on May 11, 2026

• Draft docs/PITCH.md — one-paragraph partnership pitch

  greenrobotllc/bio-neighbor#96 · Filter by author andytriboletti opened on May 11, 2026

• Record a short demo video; link prominently from README

  greenrobotllc/bio-neighbor#95 · Filter by author andytriboletti opened on May 11, 2026

• Outreach plan: recruit 2-3 practicing oncologists as periodic reviewers

  greenrobotllc/bio-neighbor#93 · Filter by author andytriboletti opened on May 11, 2026

• Write docs/ARCHITECTURE.md covering pipeline stages, data sources, and trust boundaries

  greenrobotllc/bio-neighbor#94 · Filter by author andytriboletti opened on May 11, 2026

• Physician-review workflow: capture oncologist annotations on outputs, feed back into eval set

  greenrobotllc/bio-neighbor#92 · Filter by author andytriboletti opened on May 11, 2026

• Curate a public benchmark corpus of de-identified / synthetic oncology cases

  greenrobotllc/bio-neighbor#91 · Filter by author andytriboletti opened on May 11, 2026

• Benchmark harness: blinded historical cases, tumor-board concordance, FP/FN analysis

  greenrobotllc/bio-neighbor#90 · Filter by author andytriboletti opened on May 11, 2026

• Embed reproducibility metadata in every report (model, prompt hash, source snapshot dates, seed)

  greenrobotllc/bio-neighbor#89 · Filter by author andytriboletti opened on May 11, 2026

• Structured JSON output schema for audit reports (companion to PDF)

  greenrobotllc/bio-neighbor#88 · Filter by author andytriboletti opened on May 11, 2026

• Add PubMed (E-utilities) as a first-class evidence source

  greenrobotllc/bio-neighbor#86 · Filter by author andytriboletti opened on May 11, 2026

• Evaluate NCCN guideline licensing; decide include / exclude with written rationale

  greenrobotllc/bio-neighbor#87 · Filter by author andytriboletti opened on May 11, 2026

• Refactor audit pipeline into four separable stages: retrieval, evidence ranking, synthesis, conclusions

  greenrobotllc/bio-neighbor#85 · Filter by author andytriboletti opened on May 11, 2026

• Render explicit uncertainty labels: 'possible omission', 'outside standard practice', 'insufficient evidence', 'requires oncologist review'

  greenrobotllc/bio-neighbor#84 · Filter by author andytriboletti opened on May 11, 2026

• Evidence grading: attach {source, pub_date, confidence, guideline_level, evidence_type} to every synthesized statement

  greenrobotllc/bio-neighbor#83 · Filter by author andytriboletti opened on May 11, 2026

• Add safety disclaimer block to PDF reports, CLI output, and macOS UI

  greenrobotllc/bio-neighbor#82 · Filter by author andytriboletti opened on May 11, 2026

• Copy audit: remove 'diagnosis' / 'replace oncologist' / 'definitive treatment' phrasing across UI, README, PDF

  greenrobotllc/bio-neighbor#81 · Filter by author andytriboletti opened on May 11, 2026

• README: answer 'what problem / why private / sources / accuracy / limitations / clinician validation' up front

  greenrobotllc/bio-neighbor#80 · Filter by author andytriboletti opened on May 11, 2026