Fixes various tool tests - #839

Draft

guerler wants to merge 7 commits into

galaxyproteomics:masterfrom

guerler:fixes.000

Commits on Sep 16, 2026

Point tool test parameters at the inputs their tools actually declare
guerler
committed
a8fdfdd
Select the conditional branches and output counts the tool tests actually exercise
guerler
committed
6d80b5f
Update the expected values the corrected test parameters now produce
guerler
committed
7c0320f
Regenerate the merged output for the corrected template parameter
guerler
committed
38add82
Bump tool versions for the changed repositories
guerler
committed
5f20e8a
Nest test parameters in their conditionals and raise the profile where tests validate
guerler
committed
5388afe

Commits on Sep 17, 2026

Replace documentation links whose hosts no longer resolve
guerler
committed
3e1337b