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Update bacterial assembly WF - change shovill assembler #1209

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Update bacterial assembly WF - change shovill assembler #1209

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b7ddfb9
change shovill assembler
hugolefeuvre Apr 15, 2026
931620a
miss a coma
hugolefeuvre Apr 15, 2026
bf1b373
remove test for assembly contig graph
hugolefeuvre Apr 15, 2026
faf52ad
uncompressing shovill input files because some fastq.gz fails
hugolefeuvre Apr 15, 2026
64a15a2
change changelog
hugolefeuvre Apr 15, 2026
bc0ecbc
add label to new boxes
hugolefeuvre Apr 15, 2026
a536480
miss a character
hugolefeuvre Apr 16, 2026
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6 changes: 6 additions & 0 deletions workflows/genome-assembly/bacterial-genome-assembly/CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,5 +1,11 @@
# Changelog

## [2.1] - 2026-04-15

### Manual update

* Add CONVERTER_gz_to_uncompressed tool box because some fastq.gz files cause errors, uncompressing them resolves the issue
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@mvdbeek mvdbeek Apr 16, 2026

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Can you isolate the problem and post a bug report at https://github.com/galaxyproject/galaxy/issues ? This seems rather unfortunate


## [2.0.1] - 2025-12-01

### Automatic update
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191 changes: 140 additions & 51 deletions workflows/genome-assembly/bacterial-genome-assembly/bacterial_genome_assembly.ga
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Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -55,13 +55,13 @@
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Expand All @@ -82,31 +82,125 @@
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Expand Down Expand Up @@ -138,8 +232,8 @@
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Expand Down Expand Up @@ -216,39 +310,39 @@
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Expand All @@ -263,7 +357,7 @@
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Expand Down Expand Up @@ -291,24 +385,24 @@
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Expand All @@ -323,7 +417,7 @@
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Expand Down Expand Up @@ -351,24 +445,24 @@
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Expand All @@ -383,7 +477,7 @@
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Expand Down Expand Up @@ -411,33 +505,28 @@
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Expand All @@ -448,7 +537,7 @@
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Expand Down Expand Up @@ -476,13 +565,13 @@
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Expand All @@ -496,7 +585,7 @@
"quality",
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