Skip to content

Updating workflows/VGP-assembly-v2/hi-c-contact-map-for-assembly-manual-curation from 2.2 to 2.3 #1202

Open
gxydevbot wants to merge 1 commit intogalaxyproject:mainfrom
planemo-autoupdate:workflows/VGP-assembly-v2/hi-c-contact-map-for-assembly-manual-curation
Open

Updating workflows/VGP-assembly-v2/hi-c-contact-map-for-assembly-manual-curation from 2.2 to 2.3 #1202
gxydevbot wants to merge 1 commit intogalaxyproject:mainfrom
planemo-autoupdate:workflows/VGP-assembly-v2/hi-c-contact-map-for-assembly-manual-curation

Conversation

@gxydevbot
Copy link
Copy Markdown
Contributor

Hello! This is an automated update of the following workflow: workflows/VGP-assembly-v2/hi-c-contact-map-for-assembly-manual-curation. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

  • toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.2 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.3
  • toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/5.2+galaxy1 should be updated to toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/5.2+galaxy2
  • toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.33+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.33+galaxy2
  • toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.11+galaxy1 should be updated to toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.11+galaxy2
  • toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.28+galaxy2 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.30+galaxy0
  • toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.2.3+galaxy0 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/pretext_map/pretext_map/0.2.4+galaxy0
  • toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1 should be updated to toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1+galaxy0
  • toolshed.g2.bx.psu.edu/repos/iuc/pretext_snapshot/pretext_snapshot/0.0.5+galaxy1 should be updated to toolshed.g2.bx.psu.edu/repos/iuc/pretext_snapshot/pretext_snapshot/0.0.7+galaxy0

The workflow release number has been updated from 2.2 to 2.3.

If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.
Any commit from another author than 'planemo-autoupdate' will prevent more auto-updates.
To ignore manual changes and allow autoupdates, delete the branch.

@gxydevbot gxydevbot changed the title Updating workflows/VGP-assembly-v2/hi-c-contact-map-for-assembly-manual-curation from 2.2 to 2.3 Updating workflows/VGP-assembly-v2/hi-c-contact-map-for-assembly-manual-curation from 2.2 to 2.3 Apr 20, 2026
@gxydevbot
Copy link
Copy Markdown
Contributor Author

There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot gxydevbot force-pushed the workflows/VGP-assembly-v2/hi-c-contact-map-for-assembly-manual-curation branch from ce8b703 to 8c333f7 Compare April 20, 2026 06:43
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant