DDOS-6033: feat: support for combined system prep an rbfe

[sg-s]

changes

• support for https://github.com/deeporiginbio/platform-toolbox/pull/517

[Copilot]

Pull request overview

This PR adds first-class SDK support for the platform’s combined RBFE workflow tool (deeporigin.rbfe), including a new RBFE execution class with multiple modes, updated tool registry wiring, and accompanying docs/tests.

Changes:

• Introduces deeporigin.drug_discovery.rbfe.RBFE (+ RBFEParams alias) to submit batch RBFE executions in full, sysprep, or rbfe modes.
• Updates the platform tool registry entry for "rbfe" to target deeporigin.rbfe@0.1.0.
• Adds unit tests and updates RBFE documentation pages/tutorial content.

Reviewed changes

Copilot reviewed 7 out of 7 changed files in this pull request and generated 3 comments.

Show a summary per file

File	Description
tests/test_rbfe.py	Adds unit tests for RBFE parameter construction and submission payload shape.
src/platform/constants.py	Points the "rbfe" tool mapping at deeporigin.rbfe and pins version 0.1.0.
src/drug_discovery/rbfe.py	Implements the new RBFE execution class, mode validation, and payload building.
src/drug_discovery/__init__.py	Exposes RBFE and RBFEParams via the deeporigin.drug_discovery package API.
docs/notebooks/clean/docking-many-ligands.ipynb	Adds two (currently empty) code cells at the end of the notebook.
docs/dd/tutorial/rbfe.md	Updates tutorial guidance to use the new RBFE class and tool key.
docs/dd/ref/rbfe.md	Updates RBFE reference page to describe RBFE modes and usage.

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[Copilot]

Pull request overview

Copilot reviewed 50 out of 54 changed files in this pull request and generated 9 comments.

[Copilot]

Pull request overview

Copilot reviewed 63 out of 67 changed files in this pull request and generated 5 comments.