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Achievement: Pull Sharkx2Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: Quickdraw

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dailypartita/README.md

Hi, I'm DP

I work on epidemiological forecasting and bioinformatics — mainly respiratory pathogens, surveillance data, and genomic pipelines.

Recently

  • China COVID-19 Forecast Hub — collaborative forecasting for respiratory disease in China
  • CDC sentinel surveillance data pipelines (weekly CSV updates)
  • WDL / Nextflow workflows for long-read sequencing and viral genomics

Selected projects

Tools I use a lot: Python, R, WDL, Nextflow, TypeScript

Pinned Loading

  1. China-COVID-19-Forecast-Hub China-COVID-19-Forecast-Hub Public

    Collaborative forecasting hub for COVID-19 and respiratory disease in China

    Python 1 4

  2. cn_cdc_crawl cn_cdc_crawl Public

    Curated surveillance data from China CDC sentinel hospitals. Data is provided in CSV format and updated weekly for respiratory disease monitoring and epidemiological forecasting.

  3. BGI_SC_wf BGI_SC_wf Public

    WDL workflow for BGI single-cell analysis

    WDL 2

  4. AlphaFold3_for_antigen-antibody_prediction AlphaFold3_for_antigen-antibody_prediction Public

    This Nextflow pipeline is designed to run AlphaFold3 for antigen-antibody prediction.

    Nextflow 1

  5. RSV_SNV_Calling_pipeline RSV_SNV_Calling_pipeline Public

    This repository contains a robust bioinformatics pipeline for the analysis of Respiratory Syncytial Virus (RSV) genomic data. Our workflow encompasses quality control, genome alignment, variant cal…

    WDL

  6. ncbi_ftp_tools ncbi_ftp_tools Public

    A high-speed downloader for efficiently retrieving files from the NCBI FTP server, optimized for parallel transfers and large-scale genomic data acquisition.

    Python