rhd_manuscript

Code for statistical analysis and figures for a proposed acute rheumatic fever manuscript.

Files:

• main_auc_mean_lambda_min_original.qmd:
  • original draft report - simply using glmnet::cv.glmnet without repeats.
  • Solution unstable based on seed/partition of data to folds.
• main_auc_mean_lambda_min.qmd:
  • modified k-fold cross-validation scheme including averaging of optimal $\lambda$ parameter values across repeated runs - using lambda.min to predict.
• main_auc_mean_lambda_1se.qmd:
  • modified k-fold cross-validation scheme including averaging of optimal $\lambda$ parameter values across repeated runs - using lambda.1se to predict.
• supplemental_material.qmd:
  • additional questions raised, supplemental figures as manuscript concept was developed.