University Medicine Essen
Popular repositories Loading
-
FHIR-PYrate
FHIR-PYrate PublicFHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter reso…
-
Body-and-Organ-Analysis
Body-and-Organ-Analysis PublicBOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical …
-
saros-dataset
saros-dataset PublicSparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data
-
Repositories
- Volcano-HL7-MLLP-Connector Public
A high-performance HL7 v2 MLLP listener that converts healthcare messages to JSON and publishes them to Apache Kafka.
- DeidentiFHIR-Pipeline Public
With the DeidentiFHIR-Pipeline, you can transfer FHIR based data from one source (e.g. a FHIR server) to a target (e.g. a FHIR server) and pseudonymize the data in between. Pseudonymization is based on the DeidentiFHIR library.
- PIGEON Public
This repository presents a reproducible framework for transforming structured FHIR data into synthetic German patient information texts. The generated corpus is used to fine-tune large language models for extracting structured medical information, providing a foundation for developing and evaluating clinical NLP applications.
- SALT Public
Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hierarchical relationships in the data.
- saros-dataset Public
Sparsely Annotated Region and Organ Segmentation (SAROS) - A large, heterogeneous, and sparsely annotated segmentation dataset on CT imaging data
- BOA-Profiles Public
A collection of HL7 FHIR profiles for AI-based Body and Organ Analysis (BOA). These profiles standardize the representation of body composition biomarkers extracted from CT imaging, enabling interoperable storage, exchange, and reuse across healthcare systems.
- HYSPI Public
HYSPI is a small Python tool for turning hyperspectral hand scans into analysis-ready spectra. It detects anatomical landmarks with MediaPipe, creates reproducible palm or fingertip masks, applies those masks to hyperspectral cubes, and writes the mean spectrum per sample to CSV.
- CycleMED Public
CycleMED is a CycleGAN-based framework for medical image translation projects using MRI and CT data. The repository provides custom dataset loader including specific medical imaging preprocessings and adaptions for training runs.
- DeidentiFHIR Public
Top languages
Loading…
Most used topics
Loading…