Skip to content
@SysBioChalmers

Systems and Synthetic Biology at Chalmers University of Technology

Pinned Loading

  1. Human-GEM Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    MATLAB 136 61

  2. yeast-GEM yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    MATLAB 123 51

  3. RAVEN RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    MATLAB 125 60

  4. GECKO GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    MATLAB 87 52

  5. DLKcat DLKcat Public

    Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

    Python 191 68

Repositories

Showing 10 of 107 repositories
  • sysbio.se Public

    The sysbio.se source code

    SysBioChalmers/sysbio.se’s past year of commit activity
    CSS 0 MIT 2 1 0 Updated Apr 21, 2026
  • RAVEN Public

    The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

    SysBioChalmers/RAVEN’s past year of commit activity
    MATLAB 125 60 10 (1 issue needs help) 0 Updated Apr 19, 2026
  • yeast-GEM Public

    The consensus GEM for Saccharomyces cerevisiae

    SysBioChalmers/yeast-GEM’s past year of commit activity
    MATLAB 123 CC-BY-4.0 51 30 (6 issues need help) 1 Updated Apr 13, 2026
  • Human-GEM Public

    The generic genome-scale metabolic model of Homo sapiens

    SysBioChalmers/Human-GEM’s past year of commit activity
    MATLAB 136 CC-BY-4.0 61 86 2 Updated Mar 30, 2026
  • GECKO Public

    Toolbox for including enzyme constraints on a genome-scale model.

    SysBioChalmers/GECKO’s past year of commit activity
    MATLAB 87 MIT 52 14 2 Updated Mar 29, 2026
  • overflow Public

    Supplementary code and results from doi:10.1101/2020.02.20.957662

    SysBioChalmers/overflow’s past year of commit activity
    MATLAB 1 0 0 0 Updated Mar 15, 2026
  • Ecoli-GEM Public

    Genome-scale metabolic model for Escherichia coli

    SysBioChalmers/Ecoli-GEM’s past year of commit activity
    HTML 2 CC-BY-4.0 1 5 2 Updated Feb 19, 2026
  • DiversifyCodons Public

    R Shiny App for diversification of codons. We strive to create diverse DNA strings that translate to the same protein sequence.

    SysBioChalmers/DiversifyCodons’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jan 27, 2026
  • sint-GEM Public

    Genome-scale metabolic model of Sungouiella intermedia

    SysBioChalmers/sint-GEM’s past year of commit activity
    MATLAB 0 GPL-3.0 1 7 0 Updated Jan 15, 2026
  • sce-crabtree-neg-study Public

    To see the results:

    SysBioChalmers/sce-crabtree-neg-study’s past year of commit activity
    MATLAB 0 MIT 0 0 0 Updated Dec 17, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…