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Plot aggregated QC measures and CBF across dataset - #521

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tsalo wants to merge 3 commits into
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group-visual-report
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Plot aggregated QC measures and CBF across dataset#521
tsalo wants to merge 3 commits into
mainfrom
group-visual-report

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@tsalo

@tsalo tsalo commented May 21, 2025

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Closes #285.

Changes proposed in this pull request

  • Create workflow to collect QC json files from ASLPrep derivatives and plot the distribution of each QC metric in a separate figure.

@tsalo tsalo added the enhancement New feature or request label May 21, 2025
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tsalo marked this pull request as draft May 21, 2025 20:18
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codecov-commenter commented May 21, 2025

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Codecov Report

❌ Patch coverage is 0% with 243 lines in your changes missing coverage. Please review.
✅ Project coverage is 78.91%. Comparing base (1729618) to head (09890f9).
⚠️ Report is 100 commits behind head on main.

Files with missing lines Patch % Lines
aslprep/interfaces/group.py 0.00% 127 Missing ⚠️
aslprep/cli/aggregate_qc.py 0.00% 116 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #521      +/-   ##
==========================================
- Coverage   83.24%   78.91%   -4.33%     
==========================================
  Files          38       39       +1     
  Lines        4101     4326     +225     
==========================================
  Hits         3414     3414              
- Misses        687      912     +225     

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@tsalo

tsalo commented May 24, 2025

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I think the plotting and concatenation interfaces are solid, but the data collection and workflow still need to be fixed up.

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Generate figures/report for the aggregated QC metrics from the combine-qc command

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