ColorCLIP

A framework for color manipulation and analysis in images using CLIP embeddings. This project provides tools for color transfer, color visualization, and cell image segmentation.

Project Structure

• trans_color/: Tools for color editing and transfer
• manifold/: Color manifold visualization and topological analysis
• segmentation/: Cell image segmentation tools
• data/: Data preprocessing utilities
• representation/: Feature representation extraction
• example_image/: Sample images for demonstration
• BCA.ipynb, DCT.ipynb, manifold.ipynb: Example notebooks

Pre-requisites

uv sync

Example Notebooks

• BCA.ipynb: Demonstrates Biological Color Alignment for transferring colors between biological images
• DCT.ipynb: Demonstrates Directed Color Transfer between images using specific color targets
• manifold.ipynb: Visualizes the color manifold in CLIP embedding space and performs topological data analysis

Dataset

• Cellpose: Download
• NeurIPS22: Download
• BBBC020: Download