Nudge to release of v3.1.0#146

Merged

ago109 merged 239 commits intodevfrom

May 1, 2026

Commits on Jul 5, 2024

create release branch
Alexander Ororbia
committed

Commits on Jul 6, 2024

Commits on Jul 8, 2024

Dev (#62)

willgebhardt
and
ago109
authored

Commits on Jul 9, 2024

Commits on Jul 14, 2024

Commits on Jul 17, 2024

slightly modded bernoulli-cell help to reflect correct compartment names
Alexander Ororbia
committed

Commits on Jul 26, 2024

Commits on Jul 27, 2024

fixed minor load bug in lif-cell
ago109
committed
fixed a blocking jit-partial call in lif update_theta method; when loading
Alexander Ororbia
committed

Commits on Jul 28, 2024

minor edit to dim-reduce
Alexander Ororbia
committed

Commits on Aug 1, 2024

Patched synapses added (#68)
Faezehabibi
authored

Commits on Aug 7, 2024

Commits on Aug 8, 2024

Commits on Aug 9, 2024

Commits on Aug 11, 2024

minor tweak to dim-reduce in utils
Alexander Ororbia
committed

Commits on Oct 7, 2024

Fix typo in pcn_discrim.md (#69)
sonnygeorge
authored

Commits on Oct 16, 2024

model_utils and rate cell (#70)
Faezehabibi
authored

Commits on Oct 25, 2024

Fix/reorganize feature library (#74)
Faezehabibi
authored

Commits on Nov 19, 2024

Commits on Dec 2, 2024

Commits on Dec 6, 2024

Update __init__.py (#83)
Faezehabibi
authored

Commits on Dec 9, 2024

Commits on Dec 10, 2024

Commits on Dec 16, 2024

Add attribute 'lr' (#90)
Faezehabibi
authored

Commits on Mar 1, 2025

Commits on Mar 3, 2025

minor tweak to attentive prob code comments
Alexander Ororbia
committed
cleaned up probe parent fit routine
Alexander Ororbia
committed
cleaned up probe parent fit routine
Alexander Ororbia
committed
cleaned up probe parent fit routine
Alexander Ororbia
committed
cleaned up probe parent fit routine
Alexander Ororbia
committed

Commits on Mar 5, 2025

minor edits to attn probe
Alexander Ororbia
committed
update attentive probe with input layer norm
rxng8
committed

Commits on Mar 6, 2025

update input layer normalization
rxng8
committed
update code to fix nan bug
rxng8
committed
minor tweak to attn probe
Alexander Ororbia
committed
cleaned up probes
Alexander Ororbia
committed
cleaned up probes
Alexander Ororbia
committed
cleaned up probes
Alexander Ororbia
committed
cleaned up probes
Alexander Ororbia
committed
generalized dropout in terms of shape
Alexander Ororbia
committed
tweak to atten probe
Alexander Ororbia
committed
tweak to atten probe
Alexander Ororbia
committed
added silu/swish/elu to model_utils
Alexander Ororbia
committed
cleaned up model_utils
Alexander Ororbia
committed

Commits on Mar 7, 2025

fix bug in attention probe dropout, fix bug in None noise_key passed in the probing jit function, add the spliting of noise_keys to two dropout in two cross attention
rxng8
committed

Commits on Mar 10, 2025

hyperparameter tunning arguments added
rxng8
committed

Commits on Mar 11, 2025

Merge branch 'main' into analysis_tools
rxng8
committed

Commits on Mar 13, 2025

Commits on Mar 14, 2025

add prior for hebbian patched synapse (#96)
Faezehabibi
authored

Commits on Mar 17, 2025

cleaned up doc-strings in odes.py to comply w/ ngc-learn format
Alexander Ororbia
committed
minor tweak to sig-figs printing in probe utils
Alexander Ororbia
committed

Commits on Mar 20, 2025

add-sigma-to-gaussianErrorCell (#97)
Faezehabibi
authored
cleaned up ode_utils, cleaned up gaussian/laplacian cell
Alexander Ororbia
committed

Commits on Mar 21, 2025

Update gaussianErrorCell.py (#98)
Faezehabibi
authored
cleaned up gauss/laplace error cells
Alexander Ororbia
committed
integrated bernoulli err-cell
Alexander Ororbia
committed

Commits on Apr 12, 2025

Commits on Apr 13, 2025

update to sindy tutorial to adhere to readthedocs formatting
Alexander Ororbia
committed
Merge branch 'main' of github.com:NACLab/ngc-learn
Alexander Ororbia
committed
Minor mods in release sync'd up back to main (#106)

authored
minor edit to h-h text in modeling api doc
Alexander Ororbia
committed

Commits on Apr 18, 2025

Update jaxProcess.py
willgebhardt
committed

Commits on Apr 23, 2025

update to mstdp-et and var-trace
Alexander Ororbia
committed
Merge branch 'main' of github.com:NACLab/ngc-learn
Alexander Ororbia
committed

Commits on Apr 25, 2025

minor tweaks + init of rl-snn exhibit lesson
Alexander Ororbia
committed

Commits on Apr 29, 2025

Dynamic synapses and updates to lessons (including operant conditioning) (#109)

ago109
and
Alexander Ororbia
authored
fixed exp-syn pytest
Alexander Ororbia
committed
Add tutorial diagram for GaussianErrorCells (#107)
Faezehabibi
authored

Commits on May 2, 2025

Refactor patched synapse (#110)
Faezehabibi
authored

Commits on May 6, 2025

Add vis_mode to generate_patch_set (#111)
Faezehabibi
authored

Commits on May 22, 2025

cleaned up trace
Alexander Ororbia
committed

Commits on May 24, 2025

edit to requirements
Alexander Ororbia
committed

Commits on May 29, 2025

rename variables for masking (#112)
Faezehabibi
authored

Commits on Jun 4, 2025

minor cleanup/patches to rate-cell/lif/hebb-syn/trace-stdp and dim_reduce method
Alexander Ororbia
committed
Merge branch 'main' of github.com:NACLab/ngc-learn
Alexander Ororbia
committed

Commits on Jun 5, 2025

Updated model_utils.py with Telu (#114)
AnkurMali
authored

Commits on Jun 7, 2025

fixed v_decay naming bug in LIF
Alexander Ororbia
committed
fixed v_decay naming bug in LIF
Alexander Ororbia
committed
nudge minor version to 2.0.2
Alexander Ororbia
committed
nudge of doc to 2.0.2
Alexander Ororbia
committed
nudge of doc to 2.0.2 (#115)

ago109
and
Alexander Ororbia
authored
minor edit to math in hh-lesson doc
Alexander Ororbia
committed
Fix workflow, numpy install, and pytest bug in github action workflows (#117)
rxng8
authored

Commits on Jul 29, 2025

minor nudge/cleanup to minor patched version 2.0.1
Alexander Ororbia
committed
minor nudge/cleanup to minor patched version 2.0.3
Alexander Ororbia
committed
Merge branch 'release' of github.com:NACLab/ngc-learn into release
Alexander Ororbia
committed
Merge branch 'release' into main
ago109
authored
Nudge of release to minor patched version 2.0.3 (#118)

authored
Merge branch 'release' of github.com:NACLab/ngc-learn into release
Alexander Ororbia
committed

Commits on Jul 30, 2025

fixed typo/error in doc evolving_synapses.md
Alexander Ororbia
committed
Merged back minor doc fix back to main (for syncing purposes) (#119)

authored
minor clean-up in model_basics docs
Alexander Ororbia
committed
minor fixes/cleanup of docs
Alexander Ororbia
committed
Merge over further doc edits/clean-up from main (#120)

authored
fixed typo in integration tutorial doc
Alexander Ororbia
committed
Minor merge (typo in integration doc) (#121)

authored

Commits on Aug 1, 2025

updated papers/talk page for ngclearn
Alexander Ororbia
committed
Updated papers/talks page in docs (#122)

authored

Commits on Dec 6, 2025

Merging over v3 to main (for roll-out of v3 upgrade) (#125)

authored
Merge branch 'release' into main
ago109
authored
Major release update (to 3.0.0) (#127)

authored
cleaned up return carriages in ode-integration doc
Alexander Ororbia
committed
update to rbm/harmonium doc
Alexander Ororbia
committed
sync up release with main for harmonium/images
Alexander Ororbia
committed

Commits on Dec 8, 2025

updated leaky-noise-cell to maintain temporal derivative of state
Alexander Ororbia
committed
minor revisons/updates to hebb/dense syn, metric utils
Alexander Ororbia
committed
cleaned-up/revised leaky-noise-cell
Alexander Ororbia
committed
cleaned-up/revised leaky-noise-cell
Alexander Ororbia
committed
Merge branch 'release' into main
ago109
authored
Minor nudge to v3.0.1 (#129)

authored
nudge release to v3.0.1
Alexander Ororbia
committed
Merge back release nudge to main (sync to v3.0.1) (#130)

authored
minor revision of leaky-noise-cell
Alexander Ororbia
committed
Merge branch 'main' into release
ago109
authored
Sync up of main with release (#131)

authored
added pointer/stub for ei-rnn song-et-al in museum doc
Alexander Ororbia
committed
Move over minor update to main docs to release docs (#132)

authored
update to ei-rnn doc
Alexander Ororbia
committed
Merge branch 'release' into main
ago109
authored

Commits on Dec 9, 2025

update to ei-rnn arch fig
Alexander Ororbia
committed
Merge branch 'main' of github.com:NACLab/ngc-learn
Alexander Ororbia
committed
added log-gaussian initializer to distribution_generator
Alexander Ororbia
committed
bug-fix to log-gaussian func
Alexander Ororbia
committed

Commits on Dec 13, 2025

Refactor patch utility functions and add doc strings (#136)
Faezehabibi
authored
Rao1999 hpc (#135)
Faezehabibi
authored
fixed minor errors in pc-rao doc
Alexander Ororbia
committed
made revisions to pc-rao doc
Alexander Ororbia
committed
mod to pc-rao doc
Alexander Ororbia
committed

Commits on Dec 23, 2025

update to docs
Alexander Ororbia
committed

Commits on Dec 29, 2025

minor revision to h-h doc-string
Alexander Ororbia
committed

Commits on Jan 9, 2026

added lkwta utility
Alexander Ororbia
committed

Commits on Jan 24, 2026

Commits on Mar 16, 2026

feat: Integrate MPSSynapse Component (#140)

antonvice
and
ago109
authored

Commits on Mar 21, 2026

integrated working som-synapse into competitive sub-package for synapses
Alexander Ororbia
committed
cleaned up som-syn
Alexander Ororbia
committed

Commits on Mar 22, 2026

update test code for hebbian patch synapse
rxng8
committed

Commits on Mar 27, 2026

fix SOM Synapse bug
rxng8
committed

Commits on Mar 31, 2026

Flexible batch size (#142)
Faezehabibi
authored
cleaned up graded/patched comps with inner batched_reset formulation
Alexander Ororbia
committed
minor clean-up of som-syn
Alexander Ororbia
committed
claned up ganglion-cell, added batched_reset
Alexander Ororbia
committed

Commits on Apr 1, 2026

minor cleanup
Alexander Ororbia
committed

Commits on Apr 4, 2026

added working hopfield-syn/modern-hopfield-syn
Alexander Ororbia
committed

Commits on Apr 5, 2026

update SOM synapse to batchified version
rxng8
committed
integrated prototype for vector-quantize memory model/synapse
Alexander Ororbia
committed
wrote/integrated an ART2A synapse model, batch-generalized
Alexander Ororbia
committed

Commits on Apr 6, 2026

updates to art2a, cleanup of probes
Alexander Ororbia
committed
updates to art2a, cleanup of probes
Alexander Ororbia
committed
added in knn-probe for utils.analysis
Alexander Ororbia
committed

Commits on Apr 7, 2026

cleaned up vq-synapse
Alexander Ororbia
committed
cleaned up vq-synapse
Alexander Ororbia
committed

Commits on Apr 15, 2026

tweaked/cleaned-up gaussian-error-cell
Alexander Ororbia
committed

Commits on Apr 26, 2026

Update JaxProcessesMixin.py
willgebhardt
committed

Commits on Apr 28, 2026

minor patch fixes, including making .mask a compartment in key syn
Alexander Ororbia
committed

Commits on Apr 29, 2026

patch to bernoulli/latency and wtas cells
Alexander Ororbia
committed

Commits on May 1, 2026

update reset function of the ganglion cell

rxng8
and
Copilot
committed
minor mod to model_utils
Alexander Ororbia
committed
docs now with a few more mods
Alexander Ororbia
committed
Merge branch 'dev' into main
ago109
authored