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Add bulk collection REST API at /api/v1 - #489

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PranavM06 wants to merge 13 commits into

Commits on Sep 22, 2026
- Add bulk collection REST API at /api/v1
  
  PranavM06
  and
  claude
  committed
  dfd9ab7
Commits on Sep 27, 2026
- Fix H6: add PyYAML so CI can collect tests
  PranavM06
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  0f7ad13
- Fix H2: add timeouts to SynBioHub calls
  PranavM06
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  6a2ef76
Commits on Sep 28, 2026
- Add timeout to GitHub template download
  PranavM06
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  aea35b0
- Fix H4: match attachments on displayId only
  PranavM06
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  6b7c3da
- Fix H5: block SSRF via SynBioHub URLs
  PranavM06
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  531ba62
- Fix H1: PUT as a single SynBioHub submit
  PranavM06
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  bf789f8
- Fix H3: keep Excel uploads off the SBOL validator
  PranavM06
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  76e6312
Commits on Sep 29, 2026
- Fix excel2sbol SSRF: convert workbooks offline
  PranavM06
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  c6516f0
- Fix: PUT of a collection's own export
  PranavM06
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  15bbdba
- Fix M1: keep workbook conversion off every host but Ontobee
  PranavM06
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  0051d86
- Fix M2: report a submit timeout as 504, outcome unknown
  PranavM06
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  368eec0
Commits on Oct 5, 2026
- Address PR bot comments: workflow permissions, URL check, file handles
  PranavM06
  committed
  6afa521