cfMEX_tools

cell-free DNA multi-feature extraction tools

• Bam to Fragment file
• Fragment size
• End motif
• Short per Long ratio
• Nucleosome footprint

uncheck boxes are currently under development

Installation

Check python version >= 3.12.0

python -V

Important modules

pip install numpy pandas pysam biopython

Setting

You can change Reference Genome path align with your local by changing in cfMEX_tools/scr/__init__.py

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# SETTING

Reference_Genome = '/mnt/sas/ref/hg38/v0/Homo_sapiens_assembly38.fasta'

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