pypesto v0.7.0 - #1736
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Aug 13, 2026
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- General
- Support for PEtab v2 import via AMICI (PEtab v2 import via AMICI (finish #1634) #1730)
- Installation / Packaging
- Update to adhere to NEP29 (Update to adhere to NEP29 #1703)
- Optimization
- Clarify use of Hessian and FIM in Fides optimizer (Fides optimizer: clarify use of Hessian and FIM #1706)
- Support pyswarm 1.0 return format (Optimize: support pyswarm 1.0 return format #1717)
- Profiling
- Improve step-size defaults and step-size robustness (Profile: Improve step-size defaults and step-size robustness #1711)
- Visualize
- Harmonize visualization API for axes and returns (Fix: harmonise visualize style -- axes, returns, attributes #1709)
- Add 2D profile visualization functions (add low level 2d profile plot function and 2d profile function #1652)
- Sampling
- Improve PyMC sampler with shared objective cache (Pymc improved #1724)
- Fix PyMC posterior extraction for newer ArviZ (Sample: Fix PyMC posterior extraction for newer ArviZ #1714)
- Bugfixes
- Fix scipy OptimizeWarning for L-BFGS-B/disp (Fix scipy OptimizeWarning for L-BFGS-B/disp #1734)
- Remove deprecated matplotlib.cm.get_cmap (Removed matplotlib.cm.get_cmap #1728)
- Fix remaining AMICI 1.0 calls and extend tests (Fix remaining AMICI 1.0 calls and extend tests #1708)
- Deprecations
- Rename profile step-size options to be explicit (Profile: Improve step-size defaults and step-size robustness #1711)
- Rename visualization alpha parameter to confidence_levels (Fix: harmonise visualize style -- axes, returns, attributes #1709)
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Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## develop #1736 +/- ##
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Coverage 84.26% 84.26%
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Files 164 164
Lines 14952 14952
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+ Hits 12599 12600 +1
+ Misses 2353 2352 -1 ☔ View full report in Codecov by Harness. 🚀 New features to boost your workflow:
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dweindl
approved these changes
Aug 13, 2026
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| - General | ||
| - Support for PEtab v2 import via AMICI (#1730) |
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Suggested change
| - Support for PEtab v2 import via AMICI (#1730) | |
| - Support for PEtab v2 import via AMICI (#1730) (experimental) |
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| 0.7.0 (2026-08-13) | ||
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| This release requires Python>=3.12. |
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| - Installation / Packaging | ||
| - Update to adhere to NEP29 (#1703) |
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| - Installation / Packaging | |
| - Update to adhere to NEP29 (#1703) |
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