Update the GCM with Chemistry for CF

src/swell/configuration/jedi/interfaces/geos_cf/namelists/AGCM_c360.rc

@@ -2,11 +2,11 @@
 # Atmospheric Model Configuration Parameters
 # ------------------------------------------
 
-       NX: 24
-       NY: 144
+       NX: 60
+       NY: 120
 
  IOSERVER_NODES: 4
-NUM_BACKEND_PES: 6
+NUM_BACKEND_PES: 24
 
       AGCM_IM: 360
       AGCM_JM: 2160
@@ -254,17 +254,13 @@ RECORD_REF_TIME: >>>SWELL_FC6H_H<<< 120000
 #   ASSIMILATION_CYCLE:  nnnnnn       #  (Default: 21600)
 #   IAU_DIGITAL_FILTER:  YES or NO    #  (Default: YES  )
 
-# Typical MERRA-2 Regular REPLAY Configuration
-# --------------------------------------------
-    REPLAY_ANA_EXPID: >>>SWELL_FP_EXP<<<
-    REPLAY_ANA_LOCATION: >>>SWELL_SCRATCHDIR<<<
+# Regular REPLAY Configuration (source set via met_replay_exp / met_replay_root)
+# --------------------------------------------------------------------------------
+    REPLAY_ANA_EXPID: >>>SWELL_REPLAY_EXPID<<<
+    REPLAY_ANA_LOCATION: >>>SWELL_REPLAY_LOCATION<<<
     REPLAY_MODE: Regular
-    REPLAY_FILE: >>>SWELL_FP_EXP<<<.ana.eta.%y4%m2%d2_%h200z.nc4
-
-    #REPLAY_ANA_EXPID:   d5294_geosit_jan18
-    #REPLAY_ANA_LOCATION: /home/dao_ops/d5294_geosit_jan18/run/.../archive
-    #REPLAY_MODE: Regular
-    #REPLAY_FILE: ana/Y%y4/M%m2/d5294_geosit_jan18.bkg.eta.%y4%m2%d2_%h200z.nc4
+    REPLAY_FILE: >>>SWELL_REPLAY_FILE<<<
+    REPLAY_FILE09: >>>SWELL_REPLAY_FILE09<<<
 
 #   4DIAU (recreate analysis tendency on the fly)
 #   ---------------------------------------------

src/swell/configuration/jedi/interfaces/geos_cf/namelists/AGCM_c90.rc

@@ -6,6 +6,7 @@
            NY: 72
 
 IOSERVER_NODES: 0
+NUM_BACKEND_PES: 8
 
 
       AGCM_IM: 90
@@ -76,9 +77,9 @@ BERES_FILE_NAME: ExtData/g5gcm/gwd/newmfspectra40_dc25.nc
 # Ocean Model Configuration Parameters
 # ------------------------------------
       OGCM.GRID_TYPE: LatLon
-      OGCM.GRIDNAME: PE360x180-DE
-      OGCM.IM_WORLD: 360
-      OGCM.JM_WORLD: 180
+      OGCM.GRIDNAME: PE2880x1440-DE
+      OGCM.IM_WORLD: 2880
+      OGCM.JM_WORLD: 1440
       OGCM.LM: 34
 
         OGCM.POLE: 'PE'
@@ -252,17 +253,13 @@ RECORD_REF_TIME: >>>SWELL_FC6H_H<<< 120000
 #   ASSIMILATION_CYCLE:  nnnnnn       #  (Default: 21600)
 #   IAU_DIGITAL_FILTER:  YES or NO    #  (Default: YES  )
 
-# Typical MERRA-2 Regular REPLAY Configuration
-# --------------------------------------------
-    REPLAY_ANA_EXPID: >>>SWELL_FP_EXP<<< 
-    REPLAY_ANA_LOCATION: >>>SWELL_SCRATCHDIR<<<
+# Regular REPLAY Configuration (source set via met_replay_exp / met_replay_root)
+# --------------------------------------------------------------------------------
+    REPLAY_ANA_EXPID: >>>SWELL_REPLAY_EXPID<<<
+    REPLAY_ANA_LOCATION: >>>SWELL_REPLAY_LOCATION<<<
     REPLAY_MODE: Regular
-    REPLAY_FILE: >>>SWELL_FP_EXP<<<.ana.eta.%y4%m2%d2_%h200z.nc4
-
-    #REPLAY_ANA_EXPID:   d5294_geosit_jan18
-    #REPLAY_ANA_LOCATION: /home/dao_ops/d5294_geosit_jan18/run/.../archive
-    #REPLAY_MODE: Regular
-    #REPLAY_FILE: ana/Y%y4/M%m2/d5294_geosit_jan18.bkg.eta.%y4%m2%d2_%h200z.nc4
+    REPLAY_FILE: >>>SWELL_REPLAY_FILE<<<
+    REPLAY_FILE09: >>>SWELL_REPLAY_FILE09<<<
 
 #   4DIAU (recreate analysis tendency on the fly)
 #   ---------------------------------------------

src/swell/configuration/jedi/interfaces/geos_cf/namelists/CAP_c90.rc

@@ -13,7 +13,7 @@ END_DATE:     29990302 210000
 JOB_SGMT:     >>>SWELL_FC_LENGTH<<<
 # number of times you run the job/seg
 NUM_SGMT:     1
-HEARTBEAT_DT:       900
+HEARTBEAT_DT:       300
 
 USE_SHMEM: 0
 

src/swell/configuration/jedi/interfaces/geos_cf/namelists/HISTORY.rc

@@ -1,141 +1,32 @@
 VERSION: 1
 EXPID:  >>>SWELL_GEOSCF_FORECAST_EXPID<<<
 EXPDSC: JEDI
-EXPSRC: GEOSCFv2/rc1/t13
-
+EXPSRC: GEOSgcm-v10.23.0+GEOSChem-14.0.0
 
 COLLECTIONS:  '>>>SWELL_GEOSCF_FORECAST_COLLECTION<<<'
-#             'geosgcm_prog'
-#             'prog.eta'
              ::
 
 ##################################################
 # The GRID_LABELS section must be after the main #
 #  list of COLLECTIONS for scripting purposes.   #
 ##################################################
 
-GRID_LABELS: PE90x540-CF
-             PE360x2160-CF
-             PC360x181-DC
+GRID_LABELS:
 ::
 
-PE360x2160-CF.GRID_TYPE: Cubed-Sphere
-PE360x2160-CF.IM_WORLD: 360
-PE360x2160-CF.JM_WORLD: 2160
-PE360x2160-CF.POLE: PC
-PE360x2160-CF.DATELINE: DC
-PE360x2160-CF.LM: 72
-
-PE90x540-CF.GRID_TYPE: Cubed-Sphere
-PE90x540-CF.IM_WORLD: 90
-PE90x540-CF.JM_WORLD: 540
-PE90x540-CF.POLE: PC
-PE90x540-CF.DATELINE: DC
-PE90x540-CF.LM: 72
-
-PC360x181-DC.GRID_TYPE: LatLon
-PC360x181-DC.IM_WORLD: 360
-PC360x181-DC.JM_WORLD: 181
-PC360x181-DC.POLE: PC
-PC360x181-DC.DATELINE: DC
-PC360x181-DC.LM: 72
-
-
   >>>SWELL_GEOSCF_FORECAST_COLLECTION<<<.template:  '>>>SWELL_GEOSCF_FORECAST_TEMPLATE<<<',
   >>>SWELL_GEOSCF_FORECAST_COLLECTION<<<.archive:   '%c/Y%y4',
   >>>SWELL_GEOSCF_FORECAST_COLLECTION<<<.format:    'CFIO',
   >>>SWELL_GEOSCF_FORECAST_COLLECTION<<<.mode:      'instantaneous' ,
-  #>>>SWELL_GEOSCF_FORECAST_COLLECTION<<<.frequency:  010000,
   >>>SWELL_GEOSCF_FORECAST_COLLECTION<<<.frequency:  >>>SWELL_FC_OUTPUT_FREQ<<<,
   >>>SWELL_GEOSCF_FORECAST_COLLECTION<<<.ref_time:   000000,
-  >>>SWELL_GEOSCF_FORECAST_COLLECTION<<<.grid_label: >>>SWELL_GEOSCF_JEDI_GRID<<<
   >>>SWELL_GEOSCF_FORECAST_COLLECTION<<<.fields:     'T'                       , 'DYN'           ,
-                          'U_DGRID;V_DGRID'         , 'DYN'           , 'ud;vd' ,
-                          'U;V'                     , 'DYN'           , 'ua;va' ,
                           'DELP'                    , 'DYN'           ,
                           'PS'                      , 'DYN'           ,
                           'Q'                       , 'MOIST'         , 'SPHU'  ,
-                          'QITOT'                   , 'AGCM'          , 'qi'    ,
-                          'QLTOT'                   , 'AGCM'          , 'ql'    ,
                           'PHIS'                    , 'AGCM'          , 'phis'  ,
                           'SpeciesConc_O3'          , 'GEOSCHEMCHEM'  , 'O3'    ,
                           'SpeciesConc_NO'          , 'GEOSCHEMCHEM'  , 'NO'    ,
                           'SpeciesConc_NO2'         , 'GEOSCHEMCHEM'  , 'NO2'   ,
                           'SpeciesConc_CO'          , 'GEOSCHEMCHEM'  , 'CO'    ,
-                          'EMIS_CO'                 , 'GEOSCHEMCHEM'  ,
-                          'EMIS_CO_IND'             , 'GEOSCHEMCHEM'  ,
-                          'EMIS_CO_POW'             , 'GEOSCHEMCHEM'  ,
-                          'EMIS_CO_TRA'             , 'GEOSCHEMCHEM'  ,
-                          'EMIS_CO_RES'             , 'GEOSCHEMCHEM'  ,
-                          'EMIS_NO'                 , 'GEOSCHEMCHEM'  ,
-                          'EMIS_NO_IND'             , 'GEOSCHEMCHEM'  ,
-                          'EMIS_NO_POW'             , 'GEOSCHEMCHEM'  ,
-                          'EMIS_NO_TRA'             , 'GEOSCHEMCHEM'  ,
-                          'EMIS_NO_RES'             , 'GEOSCHEMCHEM'  ,
-                          'EMIS_NO2'                , 'GEOSCHEMCHEM'  ,
-                          'EMIS_NO2_IND'            , 'GEOSCHEMCHEM'  ,
-                          'EMIS_NO2_POW'            , 'GEOSCHEMCHEM'  ,
-                          'EMIS_NO2_TRA'            , 'GEOSCHEMCHEM'  ,
-                          'EMIS_NO2_RES'            , 'GEOSCHEMCHEM'  ,
-                          'Met_PBLTHICK'            , 'GEOSCHEMCHEM'  , 
-                          ::
-
-
-
-
-
-  geosgcm_prog.template:         '%y4%m2%d2_%h2%n2z.nc4' ,
-  geosgcm_prog.archive:          '%c/Y%y4' ,
-  geosgcm_prog.format:           'CFIO' ,
-  geosgcm_prog.deflate:           1 ,
-  geosgcm_prog.grid_label:        PE90x540-CF ,
-  geosgcm_prog.frequency:         060000 ,
-  geosgcm_prog.vscale:            100.0 ,
-  geosgcm_prog.vunit:            'hPa' ,
-  geosgcm_prog.vvars:            'log(PLE)' , 'DYN' ,
-  geosgcm_prog.levels:            1000 975 950 925 900 875 850 825 800 775 750 725 700 650 600 550 500 450 400 350 300 250 200 150 100 70 50 40 30 20 10 7 5 4 3 2 1 0.7 0.5 0.4 0.3 0.2 0.1 0.07 0.05 0.04 0.03 0.02 ,
-  geosgcm_prog.fields:           'PHIS'   , 'AGCM'       ,
-                                 'SLP'    , 'DYN'        ,
-                                 'U;V'    , 'DYN'        ,
-                                 'T'      , 'DYN'        ,
-                                 'PS'     , 'DYN'        ,
-                                 'ZLE'    , 'DYN'        , 'H'   ,
-                                 'OMEGA'  , 'DYN'        ,
-                                 'Q'      , 'MOIST'      , 'QV'  ,
-                                 'QITOT'  , 'AGCM'       , 'QI'  ,
-                                 'QLTOT'  , 'AGCM'       , 'QL'  ,
-                                 'RH2'    , 'MOIST'      , 'RH'  ,
-                                 'O3'     , 'CHEMISTRY'  ,
-                                  ::
-
-
-
-  prog.eta.template:             '%y4%m2%d2_%h2%n2z.nc4' ,
-  prog.eta.archive:              '%c/Y%y4' ,
-  prog.eta.format:               'CFIO' ,
-  prog.eta.deflate:               1 ,
-  prog.eta.grid_label:            PC360x181-DC ,
-  prog.eta.regrid_method:        'BILINEAR',
-  prog.eta.mode:                 'instantaneous' ,
-  prog.eta.frequency:             060000 ,
-  prog.eta.duration:              060000 ,
-  prog.eta.ref_time:              000000 ,
-  prog.eta.fields:               'PHIS'       , 'AGCM'       , 'phis'       ,
-                                 'SGH'        , 'AGCM'       , 'hs_stdv'    ,
-                                 'TS'         , 'SURFACE'    , 'ts'         ,
-                                 'FRLAND'     , 'SURFACE'    , 'frland'     ,
-                                 'FRLANDICE'  , 'SURFACE'    , 'frlandice'  ,
-                                 'FRLAKE'     , 'SURFACE'    , 'frlake'     ,
-                                 'FROCEAN'    , 'SURFACE'    , 'frocean'    ,
-                                 'FRACI'      , 'SURFACE'    , 'frseaice'   ,
-                                 'PS'         , 'DYN'        , 'ps'         ,
-                                 'DELP'       , 'DYN'        , 'delp'       ,
-                                 'U;V'        , 'DYN'        , 'u;v'        ,
-                                 'TV'         , 'DYN'        , 'tv'         ,
-                                 'Q'          , 'MOIST'      , 'sphu'       ,
-                                 'O3PPMV'     , 'CHEMISTRY'  , 'ozone'      ,
-                                 'QITOT'      , 'AGCM'       , 'qitot'      ,
-                                 'QLTOT'      , 'AGCM'       , 'qltot'      ,
-                                 'QRTOT'      , 'MOIST'      , 'qrtot'      ,
-                                 'QSTOT'      , 'MOIST'      , 'qstot'      ,
-                                 ::
+                          ::

src/swell/configuration/jedi/interfaces/geos_cf/namelists/fvcore_layout.rc

@@ -0,0 +1,74 @@
+&fv_core_nml
+  k_split     = 2
+  Make_NH     = .F.
+  hydrostatic = .T.
+  do_sat_adj  = .F.
+  z_tracer    = .T.
+
+/
+
+&main_nml
+/
+
+&test_case_nml
+  test_case = 13
+/
+
+&fms_io_nml
+/
+
+&fms_nml
+  print_memory_usage=.true.
+  domains_stack_size = 24000000
+  clock_grain='MODULE',
+  clock_flags='DETAILED',
+/
+
+&gfdl_cloud_microphysics_nml
+  sedi_transport = .true.
+  do_sedi_heat = .false.
+  rad_snow = .true.
+  rad_graupel = .true.
+  rad_rain = .true.
+  const_vi = .F.
+  const_vs = .F.
+  const_vg = .F.
+  const_vr = .F.
+  vi_max = 1.
+  vs_max = 2.
+  vg_max = 12.
+  vr_max = 12.
+  qi_lim = 1.
+  prog_ccn = .false.
+  do_qa = .true.
+  fast_sat_adj = .true.
+  tau_l2v = 1200.
+  tau_v2l = 150.
+  tau_g2v = 900.
+  rthresh = 7.e-6  ! This is a key parameter for cloud water
+  dw_land  = 0.16
+  dw_ocean = 0.10
+  ql_gen = 1.0e-3
+  ql_mlt = 1.0e-3
+  qi0_crt = 8.0E-5
+  qs0_crt = 1.0e-3
+  tau_i2s = 1000.
+  c_psaci = 0.05
+  c_pgacs = 0.01
+  rh_inc = 0.30
+  rh_inr = 0.30
+  rh_ins = 0.30
+  ccn_l = 300.
+  ccn_o = 100.
+  c_paut = 1.0
+  c_cracw = 0.8
+  use_ppm = .false.
+  use_ccn = .true.
+  mono_prof = .true.
+  z_slope_liq  = .true.
+  z_slope_ice  = .true.
+  de_ice = .false.
+  fix_negative = .true.
+  icloud_f = 1
+  mp_time = 150.
+/