respiratory-forecasting-Utah 📉

Ensemble models for COVID-19 and influenza hospitalization forecasting in Utah. A collaboration between the University of Utah and the Utah Department of Health and Human Services.

Getting Started

To run State level hospitalization forecasts, visit RUNME.R. This script will source the code necessary to load functions, run models, and evaluate models.

Directory

.
├── 01_data                           # Data files
├── 02_functions                      # Functions
├── 03_code                           # Coding scripts
|   ├── clean_data                     # Scripts for cleaning UDHHS data
|   ├── A_set-up.R                     # Loading packages, data, functions
|   ├── B_main_models.R                # Running individual models + ensemble model
|   ├── C_model_eval.R                 # Model fit and model success
├── gitignore.txt                     # gitignore file
├── LICENSE.txt                       # license
├── README.md                         # Project overview
├── RUNME.R                           # Start here!
└── sessionInfo.txt                   # R version and package versions used in this repo

R package versions

Reference sessionInfo.txt in the main directory