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Ensembl / plant-scripts Public

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adapted phylogenomics code to changes in Compara TSV files#16

Merged

brunocontrerasmoreira merged 11 commits into

Ensembl:masterEnsembl/plant-scripts:masterfrom

brunocontrerasmoreira:masterCopy head branch name to clipboard

Aug 28, 2025

Conversation Commits11 (11)Checks Files changed

Merged

adapted phylogenomics code to changes in Compara TSV files#16
brunocontrerasmoreira merged 11 commits into
Ensembl:masterfrom
brunocontrerasmoreira:master

Commits

Commits on Aug 27, 2025

# NOTE: tries only the bulky all-vs-all file (GBs)
eead-csic-compbio
committed
adapted to all-vs-all TSV file
eead-csic-compbio
committed
retested
eead-csic-compbio
committed
sub get_gene_coords_GTF_file can handle long chr names
eead-csic-compbio
committed
retested on Ensembl Plants 61
eead-csic-compbio
committed

Commits on Aug 28, 2025

indented example

brunocontrerasmoreira
and
JAlvarezJarreta
authored
removed code for parsing split TSV file

brunocontrerasmoreira
and
JAlvarezJarreta
authored
fixed blanks

brunocontrerasmoreira
and
JAlvarezJarreta
authored
Ensembl is enough

brunocontrerasmoreira
and
JAlvarezJarreta
authored
Ensembl is enough

brunocontrerasmoreira
and
JAlvarezJarreta
authored
fixed blank

brunocontrerasmoreira
and
JAlvarezJarreta
authored

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