Skip to content

update of visu_net example and correct a typo in visu_funtopol_rec #61

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
Pakillo merged 2 commits into from
Mar 31, 2026
Merged

update of visu_net example and correct a typo in visu_funtopol_rec #61

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
298e25a
Update the example in visu_net.R
aliciamontesinos Mar 31, 2026
ceee2e0
Update visu_funtopol_rec.R
aliciamontesinos Mar 31, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion R/visu_funtopol_rec.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -50,7 +50,7 @@ visu_funtopol_rec <- function(int_data,cover_data){

# Network visualization and export to html

network <- visNetwork::visNetwork(nodes_list, edges_list) |
network <- visNetwork::visNetwork(nodes_list, edges_list) |>
visNetwork::visIgraphLayout(layout = "layout_with_fr") |>
visNetwork::visEdges(arrows ="to") |>
visNetwork::visGroups(groupname = "Open", color = "#F0E442") |>
Expand Down
10 changes: 5 additions & 5 deletions R/visu_net.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -51,25 +51,25 @@
#' @examples
#' # Unipartite network representation of a general recruitment network. Link width
#' # corresponds to the scaled frequency of recruitment (*Fcr*):
#' visu_net(mysite_com, mysite_cov, int_type="rec", weight="Fcr", mode="uni", scale_w=0.01)
#' visu_net(Amoladeras_int, Amoladeras_cover, int_type="rec", weight="Fcr", mode="uni", scale_w=0.01)
#'
#' # Unipartite representation of a facilitation network. Link width corresponds to the
#' # scaled *Ns* index:
#' visu_net(mysite_com, mysite_cov, int_type="fac", weight="Ns", mode="uni", scale_w=5)
#' visu_net(Amoladeras_int, Amoladeras_cover, int_type="fac", weight="Ns", mode="uni", scale_w=5)
#'
#' # Bipartite representation of a facilitation network. Link width corresponds to the
#' # scaled *Ns* index. Canopy species are shown in the upper row and recruits in the lower
#' # row of the graph:
#' visu_net(mysite_com, mysite_cov, int_type="fac", weight="Ns", mode="bi", scale_w=5)
#' visu_net(Amoladeras_int, Amoladeras_cover, int_type="fac", weight="Ns", mode="bi", scale_w=5)
#'
#' # Unipartite representation of a recruitment depression (*competition*) network. Link
#' # width corresponds to the scaled *RII* index:
#' visu_net(mysite_com, mysite_cov, int_type="comp", weight="RII", mode="uni", scale_w=5)
#' visu_net(Amoladeras_int, Amoladeras_cover, int_type="comp", weight="RII", mode="uni", scale_w=5)
#'
#' # Bipartite representation of a recruitment depression (*competition*) network. Link
#' # width corresponds to the scaled *RII* index. Canopy species are shown in the upper row
#' # and recruits in the lower row of the graph:
#' visu_net(mysite_com, mysite_cov, int_type="comp", weight="RII", mode="bi", scale_w=5)
#' visu_net(Amoladeras_int, Amoladeras_cover, int_type="comp", weight="RII", mode="bi", scale_w=5)
#'
#'
visu_net<-function(int_data,cover_data,int_type=c("rec","fac","comp"),
Expand Down
Loading