Warning
This repository has been archived and is no longer maintained.
The code is provided for historical reference and may contain unpatched or unknown vulnerabilities.
It should not be used in production systems.
Pipeline Runner, also known as Pipeliner, is an open-source and scalable solution for analyzing next-generation sequencing data. Pipeliner provides access to the same best-practices NGS pipelines developed and benchmarked by experts at CCBR and NCBR. This repository is the main source of documentation for users and developers working with or contributing to Pipeliner.
Please view the updated documentation for all CCBR Pipeliner resources here: https://ccbr.github.io/