Skip to content

[Health] Migrate packages from setup.py to pyproject.toml #46644

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
l0lawrence wants to merge 5 commits into
base: main
Choose a base branch
from

Align [tool.setuptools.packages.find] with setup.py find_packages

00966b7
Select commit
Loading
Failed to load commit list.
Draft

[Health] Migrate packages from setup.py to pyproject.toml #46644

Align [tool.setuptools.packages.find] with setup.py find_packages
00966b7
Select commit
Loading
Failed to load commit list.
Azure Pipelines / python - pullrequest failed May 4, 2026 in 26m 52s

Build #20260504.19 had test failures

6 errors / 15 warnings

Details

Tests

  • Failed: 4 (1.12%)
  • Passed: 315 (88.24%)
  • Other: 38 (10.64%)
  • Total: 357

Annotations

Check failure on line 357 in Build log

See this annotation in the file changed.

@azure-pipelines azure-pipelines / python - pullrequest

Build log #L357 

The process '/mnt/vss/_work/1/s/venv/bin/python' failed with exit code 1

Check failure on line 3194 in Build log

See this annotation in the file changed.

@azure-pipelines azure-pipelines / python - pullrequest

Build log #L3194 

PowerShell exited with code '1'.

Check failure on line 80477 in Build log

See this annotation in the file changed.

@azure-pipelines azure-pipelines / python - pullrequest

Build log #L80477 

There are one or more test failures detected in result files. Detailed summary of published test results can be viewed in the Tests tab.

Check failure on line 2883 in Build log

See this annotation in the file changed.

@azure-pipelines azure-pipelines / python - pullrequest

Build log #L2883 

PowerShell exited with code '1'.

Check failure on line 1 in sdk.healthinsights.azure-healthinsights-cancerprofiling.tests.test_cancer_profiling

See this annotation in the file changed.

@azure-pipelines azure-pipelines / python - pullrequest

sdk.healthinsights.azure-healthinsights-cancerprofiling.tests.test_cancer_profiling 

collection failure
Raw output 
ImportError while importing test module '/mnt/vss/_work/1/s/sdk/healthinsights/azure-healthinsights-cancerprofiling/tests/test_cancer_profiling.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/__init__.py:27: in <module>
    from ._rest_py3 import (
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/_rest_py3.py:40: in <module>
    from ._helpers import (
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/_helpers.py:28: in <module>
    import cgi
E   ModuleNotFoundError: No module named 'cgi'

During handling of the above exception, another exception occurred:
/opt/hostedtoolcache/Python/3.13.13/x64/lib/python3.13/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_cancer_profiling.py:7: in <module>
    from azure.healthinsights.cancerprofiling import CancerProfilingClient
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.13/site-packages/azure/healthinsights/cancerprofiling/__init__.py:9: in <module>
    from ._client import CancerProfilingClient
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.13/site-packages/azure/healthinsights/cancerprofiling/_client.py:14: in <module>
    from azure.core.rest import HttpRequest, HttpResponse
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/__init__.py:32: in <module>
    from ._rest import (  # type: ignore
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/_rest.py:32: in <module>
    from ._helpers import (
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/_helpers.py:28: in <module>
    import cgi
E   ModuleNotFoundError: No module named 'cgi'

Check failure on line 1 in sdk.healthinsights.azure-healthinsights-clinicalmatching.tests.test_match_trials

See this annotation in the file changed.

@azure-pipelines azure-pipelines / python - pullrequest

sdk.healthinsights.azure-healthinsights-clinicalmatching.tests.test_match_trials 

collection failure
Raw output 
ImportError while importing test module '/mnt/vss/_work/1/s/sdk/healthinsights/azure-healthinsights-clinicalmatching/tests/test_match_trials.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/__init__.py:27: in <module>
    from ._rest_py3 import (
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/_rest_py3.py:40: in <module>
    from ._helpers import (
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/_helpers.py:28: in <module>
    import cgi
E   ModuleNotFoundError: No module named 'cgi'

During handling of the above exception, another exception occurred:
/opt/hostedtoolcache/Python/3.13.13/x64/lib/python3.13/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_match_trials.py:7: in <module>
    from azure.healthinsights.clinicalmatching import ClinicalMatchingClient
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.13/site-packages/azure/healthinsights/clinicalmatching/__init__.py:9: in <module>
    from ._client import ClinicalMatchingClient
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.13/site-packages/azure/healthinsights/clinicalmatching/_client.py:14: in <module>
    from azure.core.rest import HttpRequest, HttpResponse
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/__init__.py:32: in <module>
    from ._rest import (  # type: ignore
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/_rest.py:32: in <module>
    from ._helpers import (
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.13/site-packages/azure/core/rest/_helpers.py:28: in <module>
    import cgi
E   ModuleNotFoundError: No module named 'cgi'

Check failure on line 1 in sdk.healthinsights.azure-healthinsights-clinicalmatching.tests.test_match_trials

See this annotation in the file changed.

@azure-pipelines azure-pipelines / python - pullrequest

sdk.healthinsights.azure-healthinsights-clinicalmatching.tests.test_match_trials 

collection failure
Raw output 
ImportError while importing test module '/mnt/vss/_work/1/s/sdk/healthinsights/azure-healthinsights-clinicalmatching/tests/test_match_trials.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/__init__.py:27: in <module>
    from ._rest_py3 import (
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/_rest_py3.py:40: in <module>
    from ._helpers import (
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/_helpers.py:28: in <module>
    import cgi
E   ModuleNotFoundError: No module named 'cgi'

During handling of the above exception, another exception occurred:
/opt/hostedtoolcache/Python/3.14.4/x64/lib/python3.14/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_match_trials.py:7: in <module>
    from azure.healthinsights.clinicalmatching import ClinicalMatchingClient
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.14/site-packages/azure/healthinsights/clinicalmatching/__init__.py:9: in <module>
    from ._client import ClinicalMatchingClient
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.14/site-packages/azure/healthinsights/clinicalmatching/_client.py:14: in <module>
    from azure.core.rest import HttpRequest, HttpResponse
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/__init__.py:32: in <module>
    from ._rest import (  # type: ignore
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/_rest.py:32: in <module>
    from ._helpers import (
../../../.venv/azure-healthinsights-clinicalmatching/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/_helpers.py:28: in <module>
    import cgi
E   ModuleNotFoundError: No module named 'cgi'

Check failure on line 1 in sdk.healthinsights.azure-healthinsights-cancerprofiling.tests.test_cancer_profiling

See this annotation in the file changed.

@azure-pipelines azure-pipelines / python - pullrequest

sdk.healthinsights.azure-healthinsights-cancerprofiling.tests.test_cancer_profiling 

collection failure
Raw output 
ImportError while importing test module '/mnt/vss/_work/1/s/sdk/healthinsights/azure-healthinsights-cancerprofiling/tests/test_cancer_profiling.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/__init__.py:27: in <module>
    from ._rest_py3 import (
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/_rest_py3.py:40: in <module>
    from ._helpers import (
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/_helpers.py:28: in <module>
    import cgi
E   ModuleNotFoundError: No module named 'cgi'

During handling of the above exception, another exception occurred:
/opt/hostedtoolcache/Python/3.14.4/x64/lib/python3.14/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_cancer_profiling.py:7: in <module>
    from azure.healthinsights.cancerprofiling import CancerProfilingClient
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.14/site-packages/azure/healthinsights/cancerprofiling/__init__.py:9: in <module>
    from ._client import CancerProfilingClient
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.14/site-packages/azure/healthinsights/cancerprofiling/_client.py:14: in <module>
    from azure.core.rest import HttpRequest, HttpResponse
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/__init__.py:32: in <module>
    from ._rest import (  # type: ignore
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/_rest.py:32: in <module>
    from ._helpers import (
../../../.venv/azure-healthinsights-cancerprofiling/.venv_mindependency/lib/python3.14/site-packages/azure/core/rest/_helpers.py:28: in <module>
    import cgi
E   ModuleNotFoundError: No module named 'cgi'
View more details on Azure Pipelines