Issues

• A rule's rate depends on the order of molecules in its reactant pattern: context-first patterns fire 2x

  richardposner/RuleMonkey#88 · Filter by author picoteepetunia opened on Sep 27, 2026

• An observable named time is never bound, so a bare time in a rate law reads the clock

  bug
  richardposner/RuleMonkey#87 · Filter by author wshlavacek opened on Sep 24, 2026

• A rate that reads time() and is zero at t = 0 never fires: zero total propensity is treated as absorbing

  bug
  richardposner/RuleMonkey#86 · Filter by author wshlavacek opened on Sep 24, 2026

• Packaging: rulemonkey-harness is not a distributable Python package

  richardposner/RuleMonkey#77 · Filter by author wshlavacek opened on Aug 21, 2026