From 57abfd68b75cb19c820c7212fd35be186e077483 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 20 May 2026 11:13:43 +0200 Subject: [PATCH 1/9] Simplify badges --- README.md | 19 +++++++++++-------- 1 file changed, 11 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index 376ba84cb..b1f495936 100644 --- a/README.md +++ b/README.md @@ -5,22 +5,25 @@ -[![Open in GitHub Codespaces](https://img.shields.io/badge/Open_In_GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core/mag) -[![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/nf-test.yml) -[![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/mag/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.3589527-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.3589527) -[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com) -[![Cite Publication](https://img.shields.io/badge/Cite%20Us!-Cite%20Publication-orange)](https://doi.org/10.1093/nargab/lqac007) + [![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.10.4-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/) -[![nf-core template version](https://img.shields.io/badge/nf--core_template-4.0.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/4.0.2) [![nf-core/documentation](https://img.shields.io/badge/See-full_documentation-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re/mag/usage)](https://nf-co.re/mag/usage) +[![nf-core template version](https://img.shields.io/badge/nf--core_template-4.0.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/4.0.2) +[![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/nf-test.yml)[![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml) +[![nf-core/documentation](https://img.shields.io/badge/Read-documentation-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re/mag/usage)](https://nf-co.re/mag/usage) +[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23mag-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/mag) + + + [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/) [![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/) - [![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/mag) +[![Develop GitHub Codespaces](https://img.shields.io/badge/Develop-GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core-mag) -[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23mag-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/mag)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core) + +[![Cite Publication](https://img.shields.io/badge/Cite%20-Publication-orange)](https://doi.org/10.1093/nargab/lqac007) ![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?label=HiRSE&labelColor=005aa0&link=https%3A%2F%2Fgo.fzj.de%2FCodePromo) [![Static Badge](https://img.shields.io/badge/%F0%9F%8D%94%20%20BIgMAG-compatible-%2324B064)](https://github.com/jeffe107/BIgMAG) ## Introduction From 83573b3985d89140545525a4d8d9c1a1f0d363ba Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 20 May 2026 11:16:11 +0200 Subject: [PATCH 2/9] Add missing zenodo badge --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index b1f495936..e340bb206 100644 --- a/README.md +++ b/README.md @@ -23,6 +23,7 @@ +[![Cite Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX) [![Cite Publication](https://img.shields.io/badge/Cite%20-Publication-orange)](https://doi.org/10.1093/nargab/lqac007) ![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?label=HiRSE&labelColor=005aa0&link=https%3A%2F%2Fgo.fzj.de%2FCodePromo) [![Static Badge](https://img.shields.io/badge/%F0%9F%8D%94%20%20BIgMAG-compatible-%2324B064)](https://github.com/jeffe107/BIgMAG) From 08b1606618ac91dda02d0f7fad6803347d09ae46 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 20 May 2026 11:18:06 +0200 Subject: [PATCH 3/9] Add missing CI badge --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index e340bb206..742034da5 100644 --- a/README.md +++ b/README.md @@ -12,6 +12,7 @@ [![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/nf-test.yml)[![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml) [![nf-core/documentation](https://img.shields.io/badge/Read-documentation-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re/mag/usage)](https://nf-co.re/mag/usage) [![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23mag-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/mag) +{% if is_nfcore -%}[![AWS CI](https://img.shields.io/badge/See-example%20results-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/{{ short_name }}/results){% endif -%} From c219d50f7397eff305101d79b96e0a5adff336e0 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 20 May 2026 11:19:35 +0200 Subject: [PATCH 4/9] Add content --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 742034da5..5f2eee547 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ [![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/nf-test.yml)[![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml) [![nf-core/documentation](https://img.shields.io/badge/Read-documentation-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re/mag/usage)](https://nf-co.re/mag/usage) [![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23mag-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/mag) -{% if is_nfcore -%}[![AWS CI](https://img.shields.io/badge/See-example%20results-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/{{ short_name }}/results){% endif -%} +[![AWS CI](https://img.shields.io/badge/See-example%20results-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/mag/results) @@ -24,7 +24,7 @@ -[![Cite Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX) +[![Cite Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.3589527-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.3589527) [![Cite Publication](https://img.shields.io/badge/Cite%20-Publication-orange)](https://doi.org/10.1093/nargab/lqac007) ![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?label=HiRSE&labelColor=005aa0&link=https%3A%2F%2Fgo.fzj.de%2FCodePromo) [![Static Badge](https://img.shields.io/badge/%F0%9F%8D%94%20%20BIgMAG-compatible-%2324B064)](https://github.com/jeffe107/BIgMAG) From b03ccf892d91b0c7bc4726799bef3eb6214dc3d4 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 20 May 2026 11:27:32 +0200 Subject: [PATCH 5/9] Reshuffle --- README.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 5f2eee547..3815f3f65 100644 --- a/README.md +++ b/README.md @@ -9,8 +9,9 @@ [![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.10.4-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/) [![nf-core template version](https://img.shields.io/badge/nf--core_template-4.0.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/4.0.2) -[![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/nf-test.yml)[![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml) [![nf-core/documentation](https://img.shields.io/badge/Read-documentation-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re/mag/usage)](https://nf-co.re/mag/usage) +[![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/nf-test.yml) +[![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml) [![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23mag-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/mag) [![AWS CI](https://img.shields.io/badge/See-example%20results-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/mag/results) From 29c9b98a23e0db2f8ade82afe6e6f39033ff0eb7 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 20 May 2026 11:32:10 +0200 Subject: [PATCH 6/9] Make formatting consistent --- README.md | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 3815f3f65..f12601587 100644 --- a/README.md +++ b/README.md @@ -9,24 +9,24 @@ [![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.10.4-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/) [![nf-core template version](https://img.shields.io/badge/nf--core_template-4.0.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/4.0.2) -[![nf-core/documentation](https://img.shields.io/badge/Read-documentation-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re/mag/usage)](https://nf-co.re/mag/usage) +[![nf-core/documentation](https://img.shields.io/badge/read-documentation-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re/mag/usage)](https://nf-co.re/mag/usage) +[![AWS CI](https://img.shields.io/badge/see-example%20results-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/mag/results) [![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/nf-test.yml) [![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml) [![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23mag-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/mag) -[![AWS CI](https://img.shields.io/badge/See-example%20results-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/mag/results) [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/) [![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/) -[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/mag) -[![Develop GitHub Codespaces](https://img.shields.io/badge/Develop-GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core-mag) +[![Launch on Seqera Platform](https://img.shields.io/badge/launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/mag) +[![Develop GitHub Codespaces](https://img.shields.io/badge/develop-GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core-mag) [![Cite Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.3589527-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.3589527) -[![Cite Publication](https://img.shields.io/badge/Cite%20-Publication-orange)](https://doi.org/10.1093/nargab/lqac007) +[![Cite Publication](https://img.shields.io/badge/cite%20-Publication-orange)](https://doi.org/10.1093/nargab/lqac007) ![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?label=HiRSE&labelColor=005aa0&link=https%3A%2F%2Fgo.fzj.de%2FCodePromo) [![Static Badge](https://img.shields.io/badge/%F0%9F%8D%94%20%20BIgMAG-compatible-%2324B064)](https://github.com/jeffe107/BIgMAG) ## Introduction From 778434dd3e252c72fa498f144d83bb9c6a462790 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 20 May 2026 11:34:03 +0200 Subject: [PATCH 7/9] First HIRSE logo --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index f12601587..6bddb95fa 100644 --- a/README.md +++ b/README.md @@ -27,7 +27,7 @@ [![Cite Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.3589527-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.3589527) [![Cite Publication](https://img.shields.io/badge/cite%20-Publication-orange)](https://doi.org/10.1093/nargab/lqac007) -![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?label=HiRSE&labelColor=005aa0&link=https%3A%2F%2Fgo.fzj.de%2FCodePromo) [![Static Badge](https://img.shields.io/badge/%F0%9F%8D%94%20%20BIgMAG-compatible-%2324B064)](https://github.com/jeffe107/BIgMAG) +![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?label=HiRSE&labelColor=005aa0&link=go.fzj.de/CodePromo) [![Static Badge](https://img.shields.io/badge/%F0%9F%8D%94%20%20BIgMAG-compatible-%2324B064)](https://github.com/jeffe107/BIgMAG) ## Introduction From e3dbf348944c10d97a591c146401d7d59fc7c9ec Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 20 May 2026 11:35:44 +0200 Subject: [PATCH 8/9] Switch singulariy to apptainer --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 6bddb95fa..0ad8228b1 100644 --- a/README.md +++ b/README.md @@ -19,7 +19,7 @@ [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/) -[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/) +[![run with apptainer](https://img.shields.io/badge/run%20with-apptainer-fc9114.svg?labelColor=000000)](https://apptainer.org/documentation/) [![Launch on Seqera Platform](https://img.shields.io/badge/launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/mag) [![Develop GitHub Codespaces](https://img.shields.io/badge/develop-GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core-mag) From 1870ba5166a5a364a1f20a2a188178b2adf422a0 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Wed, 20 May 2026 12:25:24 +0200 Subject: [PATCH 9/9] After feedback from @maxulysse and @mashehu --- README.md | 24 ++++++++++++------------ 1 file changed, 12 insertions(+), 12 deletions(-) diff --git a/README.md b/README.md index 0ad8228b1..e722ab263 100644 --- a/README.md +++ b/README.md @@ -5,29 +5,29 @@ - + [![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.10.4-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/) [![nf-core template version](https://img.shields.io/badge/nf--core_template-4.0.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/4.0.2) +[![Cite Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.3589527-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.3589527) +[![Cite Publication](https://img.shields.io/badge/cite%20-Publication-orange)](https://doi.org/10.1093/nargab/lqac007) +![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?label=HiRSE&labelColor=005aa0&link=go.fzj.de/CodePromo) [![Static Badge](https://img.shields.io/badge/%F0%9F%8D%94%20%20BIgMAG-compatible-%2324B064)](https://github.com/jeffe107/BIgMAG) + + + [![nf-core/documentation](https://img.shields.io/badge/read-documentation-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re/mag/usage)](https://nf-co.re/mag/usage) [![AWS CI](https://img.shields.io/badge/see-example%20results-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/mag/results) -[![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/nf-test.yml) -[![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml) [![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23mag-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/mag) +[![Launch on Seqera Platform](https://img.shields.io/badge/launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/mag) +[![Develop GitHub Codespaces](https://img.shields.io/badge/develop-GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core-mag) - + [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/) [![run with apptainer](https://img.shields.io/badge/run%20with-apptainer-fc9114.svg?labelColor=000000)](https://apptainer.org/documentation/) -[![Launch on Seqera Platform](https://img.shields.io/badge/launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/mag) -[![Develop GitHub Codespaces](https://img.shields.io/badge/develop-GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core-mag) - - - -[![Cite Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.3589527-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.3589527) -[![Cite Publication](https://img.shields.io/badge/cite%20-Publication-orange)](https://doi.org/10.1093/nargab/lqac007) -![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?label=HiRSE&labelColor=005aa0&link=go.fzj.de/CodePromo) [![Static Badge](https://img.shields.io/badge/%F0%9F%8D%94%20%20BIgMAG-compatible-%2324B064)](https://github.com/jeffe107/BIgMAG) +[![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/nf-test.yml) +[![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml) ## Introduction