diff --git a/README.md b/README.md
index 376ba84cb..e722ab263 100644
--- a/README.md
+++ b/README.md
@@ -5,23 +5,29 @@
   </picture>
 </h1>
 
-[![Open in GitHub Codespaces](https://img.shields.io/badge/Open_In_GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core/mag)
-[![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/nf-test.yml)
-[![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/mag/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.3589527-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.3589527)
-[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com)
-[![Cite Publication](https://img.shields.io/badge/Cite%20Us!-Cite%20Publication-orange)](https://doi.org/10.1093/nargab/lqac007)
+<!-- Meta data and citations badges -->
 
 [![Nextflow](https://img.shields.io/badge/version-%E2%89%A525.10.4-green?style=flat&logo=nextflow&logoColor=white&color=%230DC09D&link=https%3A%2F%2Fnextflow.io)](https://www.nextflow.io/)
-[![nf-core template version](https://img.shields.io/badge/nf--core_template-4.0.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/4.0.2) [![nf-core/documentation](https://img.shields.io/badge/See-full_documentation-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re/mag/usage)](https://nf-co.re/mag/usage)
-[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
-[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
-[![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)
+[![nf-core template version](https://img.shields.io/badge/nf--core_template-4.0.2-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re)](https://github.com/nf-core/tools/releases/tag/4.0.2)
+[![Cite Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.3589527-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.3589527)
+[![Cite Publication](https://img.shields.io/badge/cite%20-Publication-orange)](https://doi.org/10.1093/nargab/lqac007)
+![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?label=HiRSE&labelColor=005aa0&link=go.fzj.de/CodePromo) [![Static Badge](https://img.shields.io/badge/%F0%9F%8D%94%20%20BIgMAG-compatible-%2324B064)](https://github.com/jeffe107/BIgMAG)
+
+<!-- Documentation and launch -->
 
-[![Launch on Seqera Platform](https://img.shields.io/badge/Launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/mag)
+[![nf-core/documentation](https://img.shields.io/badge/read-documentation-green?style=flat&logo=nfcore&logoColor=white&color=%2324B064&link=https%3A%2F%2Fnf-co.re/mag/usage)](https://nf-co.re/mag/usage)
+[![AWS CI](https://img.shields.io/badge/see-example%20results-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/mag/results)
+[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23mag-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/mag)
+[![Launch on Seqera Platform](https://img.shields.io/badge/launch%20%F0%9F%9A%80-Seqera%20Platform-%234256e7)](https://cloud.seqera.io/launch?pipeline=https://github.com/nf-core/mag)
+[![Develop GitHub Codespaces](https://img.shields.io/badge/develop-GitHub_Codespaces-black?labelColor=grey&logo=github)](https://github.com/codespaces/new/nf-core-mag)
 
-[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23mag-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/mag)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)
+<!-- Execution, Reproducibility, and CI status -->
 
-![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?label=HiRSE&labelColor=005aa0&link=https%3A%2F%2Fgo.fzj.de%2FCodePromo) [![Static Badge](https://img.shields.io/badge/%F0%9F%8D%94%20%20BIgMAG-compatible-%2324B064)](https://github.com/jeffe107/BIgMAG)
+[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
+[![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
+[![run with apptainer](https://img.shields.io/badge/run%20with-apptainer-fc9114.svg?labelColor=000000)](https://apptainer.org/documentation/)
+[![GitHub Actions CI Status](https://github.com/nf-core/mag/actions/workflows/nf-test.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/nf-test.yml)
+[![GitHub Actions Linting Status](https://github.com/nf-core/mag/actions/workflows/linting.yml/badge.svg)](https://github.com/nf-core/mag/actions/workflows/linting.yml)
 
 ## Introduction